Delftia tsuruhatensis: BI380_00975
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Entry
BI380_00975 CDS
T04496
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
dts
Delftia tsuruhatensis
Brite
KEGG Orthology (KO) [BR:
dts00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dts03019
]
BI380_00975
Enzymes [BR:
dts01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BI380_00975
Messenger RNA biogenesis [BR:
dts03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BI380_00975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
DEAD
HA2_C
AAA_22
HA2_N
AAA_23
NACHT
nSTAND3
T2SSE
Cas3-like_C_2
AAA_19
AAA_25
SLFN-g3_helicase
PhoH
SRP54
TsaE
Motif
Other DBs
NCBI-ProteinID:
AOV00026
LinkDB
All DBs
Position
182554..186642
Genome browser
AA seq
1362 aa
AA seq
DB search
MPLKISFPESLPVSARREEIMEAMDRHQVIIVCGETGSGKTTQLPKIALALGRGKVNATP
DDKGQVRGHLIGHTQPRRIAASSVAKRIAEELNTPLGDVVGYKVRFQDRLSKDASVKLMT
DGILLAETQTDPLLKAYDTLIIDEAHERSLNIDFLLGYIKQILPRRPDLKVVVTSATIDA
ERFSRHFEGPKGPAPVIMVSGRTYPVEMRWRPFEEKRDHDLNDAIAEGVDELWAGGAGGD
ILVFLPGEREIREAADHLRKHLAQQPVLRHAEVLPLFSRLSQAEQDRIFDSHTGRRIVLA
TNVAETSLTVPGIRYVIDAGTARVKRYSFRSKVEQLLVEPISQAAANQRAGRCGRVANGI
CIRLYDEADFGTRARFTDPEILRSSLAGVILRMKSLGLGDVVNFPFLEAPSGRAIADGYQ
LLGELGAVDERGELLPMGRELSRLPLDPRVGRMILEARTRGAVAEVLVIASALSVQDVRD
RPLEAQQQADQQHAKFDDEKSEFSGYLRLWKWLQDARGGKVVAKSRKEMATAQAPAAKPS
ARNAAFLPVAQRSGGQSVAAPAAEALAAFHPQDTGPGTDDEPSHKLSNRQWEQLLRQNFI
NIRRVREWRDIHSQLLTVVNEHKWKVNTEPAGYDAVHLSMLSGLLGNLGYKGDESDAYLG
ARGIRFHPHPGAHLSKKPGRWIVAAELVETSRLYGRGIAAIDPQWLEEVGAHLLKKQLLD
PHWSKNQADVVALERATLYGLVVYNGRRMSYGRIDPQSAREIFIRQALVEGQWDTRWHFL
PANLKLVRKVEELEHKSRRQDVLVDDELIYAFYDQQIPKDVFSGATFDHWFREAAKENAD
LLRLSRDELMRHEAAGITTQAFPKVVKLGGVDCTASYLHSPGDARDGITVTVPLFVLNQV
SDERVEWLVPGMLKDKLQALLKSLPQRPRSRFVPLPESAQRLAELFTTPERWGQGSLIDA
LLKQVRDETSLDVKRADFKLDMLSPHLFMNFRITDEHGRQLGQGRNLGALKAELGAKARG
AFQALAALKVASVTEAAAPPAAASEAGKKAESGARPDKTAKPEKADQAKPASNARPSQPA
DSRYKEWSFGELPELMEIGRGGQTLIGFPALIDHGDAVGIEVFDEPEVAAARHRVGLRRL
FALQIRDALKYLEKNIPDLQKMAVAYMPLGTQEELREQIIDVAIDRAFLQEPLPTNDAQF
KQRVQDGRGRLTLIANEVARMASTILVEYAAAQRKIKDTKNAPDATADAAQQLQRLVPKN
FIAAAPWTQLQHYARYLKAITSRLDKYRADPARDASRLAELRPLEQRYWRLVAERKGHID
ARMQEYRWMLEELRVSFFAQELRTPYPVSIKRLDKVWQQLQN
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atgcctttgaagatcagcttccctgaatccctgcccgtatccgcccgccgtgaggaaatc
atggaggccatggaccggcaccaggtcatcatcgtgtgcggcgagacgggctcgggcaag
accacgcagctgcccaagatcgcgctggcgctgggccggggcaaggtcaacgccacgccc
gacgacaagggccaggtgcgcggccacctgatcggccacacgcagccgcgccgcattgcc
gccagctcggtggccaagcgcattgccgaggagctgaacacgccgctgggcgatgtggtg
ggctacaaggtgcgtttccaggaccggctgtccaaggacgcctcggtcaagctgatgacg
gacggcatcctgctggccgagacgcagaccgacccgctgctcaaggcctacgacacactg
atcatcgatgaggcccacgagcgcagcctcaacatcgacttcctgctgggctacatcaag
cagatcctgccccggcgccccgacctcaaggtggtggtgacatcggccaccatcgatgcc
gagcggttctccaggcacttcgaaggccccaaggggcctgcgccggtgatcatggtctcg
ggccgcacctaccccgtggagatgcgctggcgcccgttcgaggaaaagcgcgaccatgac
ctcaacgacgccatcgccgaaggcgtggacgagctgtgggccggcggcgcgggtggcgac
atcctggtcttcctgcccggcgagcgcgagatccgcgaggcggccgaccacctgcgcaag
cacctggcacagcagcccgtgctgcgccatgccgaggtgctgccgctgttctcacgcctg
tcgcaggccgagcaggaccgcatcttcgacagccacacgggccggcgcatcgtgctggcc
accaacgtggccgagacctcgctgaccgtgcccggcatccgctatgtgatcgatgcgggc
acggcgcgcgtcaagcgctattccttccgcagcaaggtcgagcagttgctggtcgagccc
atcagccaggcggccgccaaccagcgcgccggccgttgcggccgcgtggccaacggcatc
tgcatccgcctgtacgacgaggccgacttcggcacgcgcgcgcgcttcaccgaccctgaa
atcctgcgctcctcgctggccggcgtcatcctgcgcatgaagtcgctgggcctgggcgac
gtggtgaactttcccttcctcgaagcgccctcgggccgtgccattgccgacggctaccag
ctgctgggcgagctgggtgccgtggacgagcgcggcgagctgctgcccatgggccgcgag
ctgtcgcgcctgccgctggacccgcgcgtgggccgcatgatcctggaggcgcgcacgcgc
ggcgccgtggccgaggtgctggtcatcgcctcggccctgtccgtgcaggacgtgcgcgac
cggccgctggaggcccagcagcaggccgaccagcagcacgccaagttcgacgacgagaaa
agcgaattcagcggctacctgcgcctgtggaaatggctgcaggatgcgcgcggtggcaag
gtggttgccaagagccgcaaggaaatggccacggcccaggcgccggctgccaagccatcg
gcgcgcaatgccgccttcctgcccgtggcccagcgcagcggcgggcagagcgtggccgcc
ccggcggccgaggcgttggcggccttccatccgcaggacaccggtcccggcacggatgac
gagccctcgcacaagctcagcaaccgccagtgggagcagctgctgcgccagaacttcatc
aacatccgccgcgtgcgcgaatggcgcgacatccactcgcagctgctgaccgtggtcaac
gagcacaagtggaaggtcaacaccgagcccgcgggctacgacgccgtgcacctgtccatg
ctgtccggcctgctgggcaacctgggctacaagggcgatgaaagcgacgcctacctgggc
gcgcgcggcatccgcttccatccgcacccgggcgcccacctgtccaagaagccggggcgc
tggatcgttgcggccgagctggtggaaacctcgcgcctgtacggccggggcatcgccgcc
atcgatccgcagtggctggaggaagtcggcgcccacctgctcaagaagcaactgctcgat
ccgcactggtccaagaaccaggccgacgtggtggcgctggagcgcgccacgctctatggc
ctggtggtctacaacggccggcgcatgagctatggccgcatcgatccgcagtctgcgcgc
gagatcttcatccgccaggccctggtggaggggcagtgggacacgcgctggcacttcctg
cccgccaacctcaagctggtgcgcaaggtcgaggagctggagcacaagagccgccgccag
gacgtgctggtcgatgacgagctgatctacgccttctacgaccagcagatccccaaggac
gtgttcagcggcgccaccttcgaccattggttccgcgaggcggccaaggaaaacgccgac
ctgctgcgcctgtcgcgcgacgaactgatgcgccacgaggctgccggcatcaccacccag
gcctttcccaaggtggtcaagctcggcggcgtggactgcacggccagctacctgcacagc
ccgggcgacgcgcgtgacggcatcaccgtcaccgtgccgctgttcgtgctcaaccaggtc
agcgacgagcgcgtggaatggctggtgcccggcatgctcaaggacaagctccaggccctg
ctcaagagccttccgcagcgcccgcgcagccgcttcgtgcccctgcccgaaagcgcccag
cgcctggccgaactcttcaccacgcccgagcgctggggccagggatcgctcatcgatgcc
ctgctcaagcaggtgcgcgacgagacctcgctggacgtcaagcgtgccgacttcaagctg
gacatgctcagcccgcacctgttcatgaacttccgcatcacggacgagcatggacgccaa
ctgggccagggccgcaacctgggcgcgctcaaggccgaactgggcgccaaggcgcgcggc
gccttccaggcgctggccgcgctgaaggtggcttcggtcacggaggctgcggccccacct
gccgccgcgtccgaagccggcaagaaggcggaatctggcgccaggccggacaagacagca
aagcctgaaaaggcggaccaggccaagcccgccagcaacgccaggcccagccagcccgcc
gacagccgctacaaggaatggagctttggcgagctgcccgagctgatggagatcggccgg
ggcggacagacgctgatcggctttccggcgctgatcgatcacggcgatgccgtcggcatc
gaggtcttcgacgagcccgaggtcgcggccgcgcgccaccgcgtgggcctgcgccgcctg
ttcgcgctgcagatccgcgatgcgctcaagtacctggaaaagaacatcccggatctgcag
aagatggccgtcgcctacatgccgctgggcacgcaggaggaactgcgcgagcagatcatc
gacgtggccatagaccgcgccttcctgcaggagccgctgcccaccaacgacgcgcagttc
aagcagcgcgtgcaggacgggcgcggccggctgacgctgatcgccaacgaggtggcgcgc
atggcctccaccatcctggtcgagtacgcggcggcccagcgcaagatcaaggacaccaag
aacgcgcccgacgccacggccgacgccgcccagcaactgcagcgcctggtgcccaagaac
ttcatcgcggccgcgccctggacccagctgcagcactacgcgcgctacctcaaggccatc
accagccggctggacaagtaccgcgccgaccctgcgcgcgacgccagccgcctggccgag
ctgcgcccgctggagcagcgctactggcgcctggtggccgagcgcaagggccacatcgat
gcgcgcatgcaggagtaccgctggatgctggaggagctgcgcgtgagcttcttcgcccag
gagctgcgcacgccttacccggtcagcatcaagcggctggacaaggtctggcagcagctg
cagaactag
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