Delftia tsuruhatensis: BI380_21340
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Entry
BI380_21340 CDS
T04496
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dts
Delftia tsuruhatensis
Brite
KEGG Orthology (KO) [BR:
dts00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dts03016
]
BI380_21340
Enzymes [BR:
dts01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BI380_21340
Transfer RNA biogenesis [BR:
dts03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BI380_21340
Prokaryotic type
tRNA splicing ligases
BI380_21340
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AOV06021
UniProt:
A0ABN4SQX6
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All DBs
Position
complement(4601899..4603131)
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AA seq
410 aa
AA seq
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MKDNAMNYLQHNVENGVPIKMWTKGVPVEDEARKQLENAARLPVVFKHVAAMPDVHLGIG
ATVGSVIPTIKAIIPAAVGVDIGCGMMAAKTTLRAEDLPDNLGPLRSAIEQAVPHGSVPR
HRGRDPGSWENPPVSVDQVWATLAEEFDLLCELHPRLANTNNRKHLGTLGSGNHFIEICL
DEAGFVWFMLHSGSRGVGNAIGTHFIELAKKDAELHQRNLPDKDLAYFEEGARYFGDYVR
GVSWAQKFAMRNREVMMANLIATVRKVIAKPFESHVEAVNCHHNYVQQERHFGQDVFITR
KGAVSARRGELGIIPGSMGARSYIVRGLGNPESFESCSHGAGRVMSRTKAKKMFSVADHI
KATEGVECRKDANVVDEIPMAYKDIDAVMAAQQDLVEVVHTLKQVVCVKG
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
ctgaaggacaacgcaatgaactacctgcaacacaacgtggaaaacggcgtgcccatcaag
atgtggaccaagggcgtgcccgtggaggacgaggcgcgcaagcagctggagaacgccgcg
cgcctgcccgtggtgttcaagcatgtcgcggccatgcccgatgtgcacctgggcataggc
gccaccgtgggctcggtgattccgaccatcaaggccatcatcccggcggccgtgggcgtg
gacatcgggtgcggaatgatggctgccaagaccacgctgcgcgccgaggacctgcccgac
aacctgggcccgctgcgctcggcgatagagcaggccgtgccgcatggctcggtgccgcgc
caccggggccgtgatccaggcagctgggagaacccgcccgtgtcggtggaccaggtctgg
gccacgctggccgaggagttcgacctgctgtgcgagctgcatccgcgcctggccaacacc
aacaaccgcaagcacctgggaacgctgggcagcggcaaccacttcatcgagatctgcctg
gacgaggcgggcttcgtgtggttcatgctgcactcgggctcgcgcggcgtgggcaatgcc
atcggcacccatttcatcgagctggccaagaaggacgcagaactgcatcagcgcaacctg
cccgacaaggacctggcctatttcgaggaaggggcccgctactttggcgactatgtgcgc
ggcgtgtcctgggcgcagaagttcgccatgcgcaaccgcgaggtgatgatggccaacctc
atcgccacggtgcgcaaggtgatcgccaagcccttcgagtcgcatgtggaggcggtgaac
tgccaccacaactacgtgcagcaggagcgccatttcggccaggacgtgttcatcacccgc
aagggcgcggtgagcgcgcggcgcggcgagctgggcatcatcccgggcagcatgggcgcg
cgcagctatatcgtgcgcggcctgggcaacccggagagcttcgagagctgcagccacggt
gcgggccgcgtgatgagccggaccaaggccaagaagatgttcagcgtggcggaccacatc
aaggccaccgagggcgtggaatgccgcaaggatgccaatgtggtggacgagattcccatg
gcctacaaggacatcgatgcggtcatggccgcgcagcaggatctggtggaggtggtgcac
accctgaagcaagtggtgtgcgtgaaagggtga
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