Dyella thiooxydans: ATSB10_09140
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Entry
ATSB10_09140 CDS
T04308
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dtx
Dyella thiooxydans
Pathway
dtx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dtx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATSB10_09140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dtx03019
]
ATSB10_09140
03009 Ribosome biogenesis [BR:
dtx03009
]
ATSB10_09140
Enzymes [BR:
dtx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ATSB10_09140
Messenger RNA biogenesis [BR:
dtx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ATSB10_09140
Ribosome biogenesis [BR:
dtx03009
]
Prokaryotic type
rRNA processing factors
ATSB10_09140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4901
Motif
Other DBs
NCBI-ProteinID:
AND68368
UniProt:
A0A160MZP7
LinkDB
All DBs
Position
complement(966176..969307)
Genome browser
AA seq
1043 aa
AA seq
DB search
MKRMLINATQREELRVAIVDGQTLYDLDIEIPSREQKKANIYKGRITRVEASLEACFVDY
GAERHGFLPIKEIAREYFTPGLDPHKANIRELLKEGQELVVQVEKEERGNKGAALTTYIS
LAGRYMVLMPNNPKAGGVSRRIEGEDRQALKEALDLLNVPDDVGLIVRTAGMGRDAEELQ
WDLDYLLTLWRSISEAAAKQKAPFLIYQESKLFIRALRDYLRNDIGEILIDEESLFNDAR
EFMQQVMPNALRKLKLYKDDTPLFSRYQIETQIESAFDRQVRLPSGGSIVIDQTEALTAI
DINSAKSTKGGDIEETAFNTNCEAAVEIARQLRIRDAGGLIVIDFIDMDSPRHQREVEEK
LKDALKLDRARVQVGRISRFGLLEMSRQRLRPSLGEATQIVCPRCEGHGHIRSVESLSLS
TLRLIEEHAMKDNTGQVLVQAPPTVANFLLNEKRASVVEIELRNKVHVVIVADRKLQTPH
IEIQRIKEAEMGEHSKPSYERLTAVEASPIPKMGQALGSSEQPAVSGVVPSTPAPVREET
AQVAAAAPAPKAAPRLQAAAPAPAPSGGLLTRLLGWFRGPAEAPAPSEPDSSERSGNRRQ
GPRRDERNRPAQQAQGNASQGNKGNRREQGQQPGRSGNAQQQKGNRQRGGEQEQAGRSRQ
EKAASGNSPRQDKAPQPRPQPKSESANAKADSAGTPPASNRPERQAPAAAARPQSPQGPA
VSEAPAEEPKKLVTAAAEPVAATGQAPAEGAAEATDGSTPRRRRGRRGGRRRRRHDEGTA
GTTADAASQADGLDDEDRDDQHDGTGEGAAPAPSTRPAEAGAAAIAAAIVTSASADVSTE
PTLPANTENAAEARTVTMAPPVATVTTSAMTSFNLPTLPPIPPASAEPAQGNYSEADEPV
QEVPSITVATPAPAPAPAPAVTVTTQEEKQDDTVSVAPLPQAENEMALPGVTDTDAIAPT
PAASPAAEPAITIAAGPAQGDLLAQAATVTPTHTPREAIEPPAATKHAALEPGATTEPPA
SETPEADKEDAPERKQDGNTETN
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgttgatcaacgcaactcagcgtgaagagttgcgtgtggccatcgtcgat
ggccagaccctgtacgacctcgatatcgaaatcccctcgcgcgagcagaaaaaggccaac
atctacaaaggccgcatcacccgcgtcgaagcctcgctggaagcctgtttcgtcgactat
ggcgccgagcgccacggcttcctgccgatcaaggaaatcgcccgcgagtacttcaccccg
ggcctggatccgcacaaggcgaacatccgcgagctgctgaaggaaggccaggaactggtc
gtccaagtcgagaaggaagagcgcggcaacaagggcgctgcactgaccacctacatcagc
ctcgccggccgctacatggtgctgatgcccaacaacccgaaggcgggcggcgtctcgcgc
cggatcgagggcgaggatcggcaggcgctgaaggaagcgctggacctgctcaacgtaccg
gatgacgtcggcctgatcgtgcgcaccgccggcatgggccgcgacgccgaagagctgcag
tgggacctggactacctgctcaccctgtggcgctcgatctccgaggccgccgccaagcag
aaggctccgttcctgatctaccaggaatcgaagctgttcatccgtgccctgcgcgactac
ctgcgcaatgacatcggcgagatcctcatcgacgaggaatcgctgttcaacgacgcgcgc
gagttcatgcagcaggtgatgcccaacgccctgcgcaagctcaagctgtacaaggacgat
accccgctgttctcgcgctaccagatcgagacgcagatcgagagtgcgttcgatcgccag
gtacgcctgccctccggtggctcgatcgtgatcgaccagaccgaggcactgaccgcgatc
gacatcaactcggccaagtcgaccaagggcggcgacatcgaggaaaccgccttcaacacc
aattgcgaagctgcggtggagatcgcccgccagctgcgcatccgcgacgccggcggcctg
atcgtcatcgacttcatcgacatggacagcccgcgccaccagcgcgaggtcgaggagaag
ctgaaggacgccctcaaactcgatcgcgcccgtgtgcaggtcggtcgcatctcgcgcttc
ggcctgctggagatgtcgcgccagcgcctgcgcccgagtctgggcgaagcgacacagatc
gtctgcccgcgttgcgaaggccacggccacatccgcagcgtggagtcgctgtcgctgtcg
accctgcgcctgatcgaagagcacgcgatgaaggacaacaccggccaggtgctggtgcag
gcgccgccgacggttgccaacttcctgctcaacgagaagcgcgccagcgtcgtcgagatc
gaactgcgcaacaaggtgcacgtggtcatcgttgccgaccgcaagttgcagaccccgcac
atcgagatccagcggatcaaggaagcggagatgggcgagcacagcaagcccagctacgag
cgcctgaccgctgtcgaggcctcgccgatcccgaagatgggccaggccctgggcagcagc
gagcagcccgcggtcagcggcgtggttccatccacgccagctccggtccgcgaggaaact
gcccaggtcgccgcagcagcacctgccccgaaggctgcgccgcgtctccaggcagcggcg
cccgcaccggccccgtccggcggccttctgacccgactgctgggctggttccgtggcccg
gccgaagcgcctgcaccgtccgaaccggacagcagcgagcgctccggcaatcgtcgtcag
gggccgcgccgcgacgagcgcaatcgtcccgcccagcaggcccagggcaatgcatcccag
ggcaacaagggcaatcgccgcgaacagggccagcagcccggtcgcagtggcaatgcgcag
cagcaaaagggcaatcgccagcgcggtggcgaacaggaacaggcaggccgctcccgccag
gaaaaagccgcttccggcaatagccctcgccaggacaaggcaccccagccgcgtccgcag
ccgaagtcggaatccgcgaatgcgaaggcggattcggccggcaccccgccggccagcaac
cgtccggagcgccaggctcccgccgcagcggcgcgcccgcaatcgccgcagggtccggcc
gtgagcgaagcaccggccgaagagccgaagaagttggtaacggcggccgccgagccggtc
gccgcgacggggcaggctcctgcggaaggtgctgccgaggccaccgacggcagcaccccg
cgtcgccgtcgcggccgtcgcggcggccgccgccgccgccgccatgacgaaggcaccgcc
ggtacgacggccgatgctgcgtcgcaggccgatggactggatgatgaggatcgcgacgat
cagcacgatggcaccggtgaaggcgcggcccccgcaccgtcgacgcgccccgccgaagcc
ggtgcggctgcgatcgcagcggcaatcgtgacctccgcatcggctgacgtgtcgaccgaa
cccacccttccggccaacaccgagaacgcggccgaagccaggaccgtgaccatggctccg
ccggtggcgacggtgactacgtcggcaatgacatcgttcaacctgcccaccttgccgccg
attccgccggcatcggccgagcccgctcaaggcaactattccgaggccgacgaaccggtc
caggaggtaccgtcgataaccgtggccacaccggcacctgcgcctgcgcctgcgcctgcg
gtgacggtaaccacacaggaggagaagcaagacgacacggtgtccgtggccccgctacct
caggcagaaaacgagatggctctgcctggcgtgaccgacaccgatgccatcgcgcccact
cccgcagccagcccggcggcagaacctgcgatcaccatcgctgcaggcccggcgcagggt
gacctgcttgcgcaagcggcgactgtgacgccaacgcacacgccccgggaagcgatcgaa
ccgcccgcggccaccaagcatgcagcgctcgaaccgggagcaacgaccgagccccctgcc
tccgaaacgccggaagcggacaaggaagacgcaccggaacgcaagcaggacggcaatacc
gaaacgaactga
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