Dyella thiooxydans: ATSB10_16890
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Entry
ATSB10_16890 CDS
T04308
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dtx
Dyella thiooxydans
Pathway
dtx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dtx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATSB10_16890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dtx03019
]
ATSB10_16890
03009 Ribosome biogenesis [BR:
dtx03009
]
ATSB10_16890
Enzymes [BR:
dtx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ATSB10_16890
Messenger RNA biogenesis [BR:
dtx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ATSB10_16890
Ribosome biogenesis [BR:
dtx03009
]
Prokaryotic type
rRNA helicases
ATSB10_16890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
adh_short
UvrA_inter
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AND69143
UniProt:
A0A160N055
LinkDB
All DBs
Position
1814371..1816200
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AA seq
609 aa
AA seq
DB search
MSSPSSDSVPAAAGFTALGLAPDLLRALADVGYESPSPIQAATIPPLMEGRDVLGQAQTG
TGKTAAFALPILSRIELKPGKPQALVLAPTRELAIQVAEAFQRYATYLPGLQVLPIYGGQ
SYGPQLQALRRGVQIVVGTPGRVIDHLDKGTLDLSELKYLVLDEADEMLRMGFIDDVTKV
LEATPPTRQVALFSATMPTVIRKIAQQHLKDPVEVTIKSSTTTAANIRQRYWFVSGLHKL
DAMTRILEAEPFDAMIIFARTKQATEELAEKLSARGFAAAAINGDIAQPQRERVIQQLKD
GKLDILVATDVAARGLDVERISHVMNYDIPYDTESYVHRIGRTGRAGRNGEAILFVTPRE
KGMLRAIERATRQPIEEMKLPTVEAVNDVRIGKFKQRISDTLAQGGLEFFQQLIEQYETE
HNVPAIEIAAALARIAQGDQPLLLTPPPKREFEPRERPARAEREPRDARDSRGRDGAPRE
GFRPAVRAHVTEPGKRTYRIEVGHEHGVKPGNIIGAIANEAGLESSHMGRLSIRGDYSLI
DLPDGMPKDIFEHLKKVWVVQRQLRIHEWDGQDDGAADRPPPRRSGPRPGGFKGKPRPGG
HGKPPRRHS
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccccgtcttccgactccgtaccggcagccgccggcttcaccgcgcttggcctc
gcaccggacctgctgcgcgccctcgccgatgtcggctacgagtcgccctcgccgatccag
gccgccaccatcccgccgctgatggaaggccgcgacgtgctcggccaggcgcagaccggc
accggcaagaccgccgcattcgccctgccgatcctgtcgcgcatcgagctcaagcccggc
aagccgcaggcgctggtgctggcgccgacgcgcgagctggcgatccaggtcgccgaggca
ttccagcgctacgccacctatctgcccggcctgcaggtgctgccgatctacggcggccag
agctacggcccgcagctgcaggcgctgcgccgcggcgtgcagatcgtggtcggtactccc
ggccgcgtgatcgaccacctggacaagggcacgctggacctgtcggaactgaagtacctg
gtgctcgacgaggccgacgagatgctgcgcatgggcttcatcgacgacgtcaccaaggtg
ctcgaggcgaccccgccgacccgccaggtggcgctgttctcggccaccatgcccacggtg
atccgcaagatcgcgcagcagcacctgaaggatccggtcgaggtcaccatcaagtcctcc
accaccaccgcggccaacatccgccagcgctactggttcgtctccggcctgcacaagctg
gacgcgatgacgcgcatcctggaggccgagccgttcgacgcgatgatcatcttcgcgcgc
accaagcaggccaccgaggagctggccgagaagctgtccgcgcgcggcttcgccgcggcc
gcgatcaacggcgacatcgcccagccgcagcgcgagcgggtgatccagcagctcaaggac
ggcaagctcgacatcctggtcgccaccgacgtggcggcgcgcggcctggacgtggagcgc
atcagccacgtcatgaactacgacatcccgtacgacaccgagagctacgtgcatcgcatc
ggccgcaccggccgcgcgggccgcaacggcgaggcgatcctgttcgtcaccccgcgcgag
aagggcatgctgcgggcgatcgaacgcgccacgcgccagccgatcgaggagatgaagctg
cccaccgtcgaggcggtgaacgatgtgcgcatcggcaagttcaagcagcgcatcagcgat
accctggcgcagggcggcctggagttcttccagcagctgatcgagcagtacgagaccgaa
cacaacgtgccggcgatcgagatcgccgccgccctggcgcggatcgcccagggcgaccag
ccgctgctgctgactccgccgccgaagcgcgagttcgagccgcgcgagcggccggcccgc
gccgagcgcgagccgcgggatgcacgcgacagccgtggccgcgacggcgcaccgcgcgaa
ggcttccgtcccgctgtgcgcgcccacgtcaccgagccgggcaagcgcacctaccgcatc
gaagtgggccacgagcacggcgtgaagccgggcaacatcatcggcgccatcgccaacgag
gccggcctggaaagcagccacatgggccgactgagcatccgcggcgactacagtctgatc
gacctgcccgacggcatgccgaaagacatcttcgagcacctgaagaaggtctgggtggtg
cagcgccagctgcgcatccacgagtgggacggccaggacgacggtgccgccgaccgtccg
ccgccgcgccgcagcggtccgcgcccgggcggcttcaagggcaagccccggccgggcgga
cacggcaagccgccgcggcgtcattcctga
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