Dyella thiooxydans: ATSB10_32890
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Entry
ATSB10_32890 CDS
T04308
Name
(GenBank) ATP-dependent helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
dtx
Dyella thiooxydans
Brite
KEGG Orthology (KO) [BR:
dtx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dtx03019
]
ATSB10_32890
Enzymes [BR:
dtx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ATSB10_32890
Messenger RNA biogenesis [BR:
dtx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ATSB10_32890
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
CON_HrpB
ResIII
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AND70743
UniProt:
A0A160N416
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All DBs
Position
3575252..3577771
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AA seq
839 aa
AA seq
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MTATPADFPITPLLPDIRASLAAHPRLVLEAPPGAGKTTQVPLALLDAPWLERRKILMLE
PRRIAARAAAQFMAQQLGEPVGQTVGYSIRFESRTSVATRIEVVTEGILTRLIQDDPELT
GIGAILFDEFHERHLAGDLGAALALDVQGTLRPDLRLLVMSATLDGERVAQWLDAPRISS
PGRSFPVRIEHPPARAQETLEQHLARTVRQALAENDGDVLVFLPGRREIARAQTVLGNTL
DEAIELVPLHGELSLAEQQLALGTGEPGTRRVVLATNVAESSVTLPGIRAVVDSGLAREP
RFDPNSGFTRLETVTISQASADQRAGRAGRVAEGTAYRLWPQSRRLEPSRTAEIAQAELS
ALALELAAWGITAGSGSDLAWLDPPPSGALAQGRELLAALGALDADGRITRLGRQMLALG
AAPRLAAAALRAPEERRALVADLLALTEARSPLRGEQSRTDDFRVRVGALHVWRDRRGGG
SHAGADAGALAAIEQAAKGWRRRLDLRTAASGVPDSHAVGDLLVHAYPDRIAYRDANNPL
RYTLANGRGVRLHEQTALLGEPWLVVLDLRHEARDSLVLAAAPLDPRTLEAEFPQGFARE
RVLRWNEARGAVEAFEERRFGAIVMERRSVPVQPADALPALLAAVRSRGLEVLPWSDAAR
RLRLRIQALRGWMPELDLPDVSDAALLATLEDWLAPYLAGKRGLDALGADDLSQALAAML
DYGQRQQLDAQAPDQWLAPSGQHRRLEYAPDEPPVLAVKLQELFGLADTPRVGGGRVPVT
LHLLSPAGRPIQMTQDLKGFWERTYPEVKKELKGRYPRHPWPDDPWTATPTHRAKPRGT
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccacgcctgccgacttcccgatcaccccgctgctgccggacatccgcgcctcg
ctcgccgcgcatccgcggctggtgctggaggcgcctcccggtgccggcaagaccacccag
gtgccgctggccctgctcgacgcaccttggctggaacggcggaagatcctcatgctggaa
ccgcgccgcatcgccgcccgcgcggccgcgcagttcatggcgcagcagctcggcgagccg
gtcggacagacggtcggttactcgatccgcttcgagtcgcgcaccagcgtggcaacgcgg
atcgaggtagtcaccgagggcatcctgacccggctgatccaggacgatcccgagctcacc
ggcatcggcgcaatcctgttcgacgaattccacgagcggcacctcgccggcgacctcggc
gcggcgctggcgctggacgtgcagggcacgctgcggcccgatctgcgcctgctggtgatg
tcggccacgctggacggcgaacgcgtcgcgcagtggctggatgcaccgcggatcagcagc
cccgggcgcagcttcccggtgcgtatcgagcacccgccggcgcgcgcgcaggagacgctg
gagcagcacctggcgcgcaccgtgcgccaggcgctggcggagaacgacggcgacgtgctg
gtgttcctgcccggccgacgcgagatcgcccgtgcgcagaccgtcctcggcaacacgctg
gacgaggcgatcgagctcgtgccgctgcacggcgagctgtcgctggccgagcagcagctc
gcgctcggcaccggcgagccgggcacgcggcgggtggtgctggccaccaacgtggccgag
tccagcgtgaccctgccggggatccgcgcggtggtcgacagcgggctggcgcgcgagccg
cgtttcgatccgaactccggcttcactcggctggagacggtgacaatctcccaggcctcg
gccgaccagcgcgccggccgcgccggccgcgtcgccgaaggcacggcgtaccggctgtgg
ccgcagagcaggcggctggagccctcgcgtaccgccgagatcgcccaggccgagctgtcc
gcgctggcgctggaactggccgcctggggcatcaccgcgggcagcggcagcgacttggcc
tggctggatccacccccgtccggcgcgctggcgcagggacgcgagttgctggccgcactg
ggtgcactcgatgccgacggtcgcatcacaaggctgggccggcagatgctcgcacttggc
gccgcgccgcgactggctgcggccgccctgcgcgcaccggaggaacgtcgcgccctggtc
gccgacctgctggcgttgaccgaggcacgctcgccgctgcgcggcgaacagtcgcgtacc
gacgacttccgcgtgcgcgtcggcgccctgcacgtgtggcgcgatcgccgcggcggcggc
agccatgccggcgccgatgccggggcgctggcggcgatcgagcaggccgccaagggctgg
cgtcgccggctggacctgcgcaccgccgccagcggcgtgccggacagccacgcggtcggc
gacctgctggtgcacgcatatcccgaccgcatcgcctaccgtgatgccaacaacccgctg
cgctacaccctggccaacggccgcggcgtgcgcctgcacgagcagaccgccctgctcggc
gagccctggctggtggtgctggacctgcgccacgaggcgcgcgacagcctggtgctggcc
gccgcgccgctggacccgcgcacgctcgaggccgagttcccgcaaggcttcgcgcgcgag
cgcgtgctgcgctggaacgaggcgcgcggcgcggtggaggcgttcgaggaacgccgcttc
ggggccatcgtgatggagcgccgcagcgtgccggtgcaaccggccgatgcgctgccggca
ctgctcgccgcggtgcgcagccgcggactggaggtcctgccgtggagcgatgcggcacgc
cgcctgcgcctgcgcatccaggcgttgcgcggatggatgcccgagctcgacctgccggac
gtctccgacgccgcgctgctggccacactggaggactggctggcgccttatctcgcgggc
aagcgcggcctcgatgcgctgggcgcggacgacctgtcgcaggcgctcgccgcgatgctc
gactacggccagcgccagcagctcgacgcgcaggcgccggaccagtggctggcgcccagc
ggtcagcatcgccggctcgaatacgcaccggacgagccaccggtgctggcggtgaaactg
caggagctgttcggcctggccgacacgccgcgggtcggcggcggccgcgtgccggtgacc
ctgcacctgctgtcgccggccggccggccgatccagatgacgcaggacctcaagggtttc
tgggagcgcacctatcccgaggtgaagaaggaactcaagggccgctacccgcgccatccc
tggccggacgatccgtggacggccacgcccacccaccgggccaagccgcgcggcacctga
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