Dehalococcoides sp. UCH007: UCH007_02040
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Entry
UCH007_02040 CDS
T03880
Name
(GenBank) hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
duc
Dehalococcoides sp. UCH007
Pathway
duc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
duc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UCH007_02040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
duc03019
]
UCH007_02040
Messenger RNA biogenesis [BR:
duc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
UCH007_02040
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B
RMMBL
Lactamase_B_3
Anti-Pycsar_Apyc1
DRMBL
Motif
Other DBs
NCBI-ProteinID:
BAQ34162
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Position
187619..188923
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AA seq
434 aa
AA seq
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MLLTIHRGTKEIGGNCVELSTENTRVVIDLGMPLVDVRGEPFDSCELEDKSIPELVDGRL
LPNVPGLYAGEDKAVDAVLLSHSHQDHYGLLRYINPEIPVYMTEGAQVLINASDLFIPTK
ANIQKPMVFEKRKSLTIGDFTVAPRLVDHSAFDAVAFLIEGKDKKIFYSGDFRGSGRKRR
LFEYMINHPIKDIDYLLLEGSMLGRVEGPYPDEESVEHKLESTFKNKQNIAFVFCSSQNI
DRIVSIYKAAKHTGQTIVIDLYTAYILDSLKYISKRLPQYFWEDIRVIYFKYHAKTLVDN
GCLSFLYKCNRNKIEKVNVNRDRNNIVMITRDNYDFTKILDYIDNASGVKAIYSMWEGYL
EKSGLEEKLRQRKIQLERVHTSGHATKQDLKRFVEAMKPGCLIPIHTFYPQDYQDLFPDT
PVRQLEDGEMLVLK
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgctattaaccatccatcgtggaaccaaggaaatcgggggtaactgcgttgaactatcc
acggagaacacgagggtagttattgacctcggtatgccgctggtagatgtgcggggcgaa
ccatttgacagttgtgaacttgaggataaaagcataccagaacttgtagatgggcgtcta
ttgccgaatgtgccaggtctgtatgccggcgaggacaaggctgttgatgccgtcctgctg
tcgcactcgcaccaagatcattatggtctattgcggtatattaaccctgagattcctgtc
tatatgactgaaggcgctcaagtgttaataaacgcatccgatctttttattcccacgaaa
gccaacatacaaaaaccaatggtctttgaaaagcgaaaatccttaactatcggagatttt
actgttgctccaaggttggttgaccactcggcttttgatgctgtggctttccttattgaa
ggtaaagacaaaaagatattttattcaggtgatttccgtggtagtggccgaaagcgaaga
ctctttgaatacatgattaatcatcccataaaagatatagactacctcttgcttgaaggt
tctatgctaggaagagtagagggtccctatccagatgaagagtcagttgaacataaactc
gaaagcacgttcaagaataaacagaatattgcttttgtattttgctcttctcagaatatc
gaccggattgtatctatttacaaagctgctaaacacacgggccagacgattgtaatagac
ctatatactgcctatattctggatagtctaaaatacatatcaaagagactccctcaatat
ttttgggaggatatccgggtaatatacttcaaatatcatgccaaaactctggtggataat
ggatgcctaagtttcctatataagtgcaatagaaacaaaatcgaaaaagtaaatgtgaat
cgagatagaaataatattgtgatgataaccagagataattacgattttacgaaaattctt
gattatatcgataatgcttcaggtgtgaaagcgatatattcaatgtgggaaggttatctg
gaaaagagtggcctggaagaaaaactgcgccagcgaaaaattcaattggagagagtgcat
actagcggccatgccacgaagcaagaccttaagcgatttgtagaagcaatgaaaccgggg
tgcctgattcccatccacaccttctacccgcaggactatcaagacctgttccctgatact
ccggtacgtcagttggaagatggcgaaatgctagttctgaaatag
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