Dehalococcoides sp. UCH007: UCH007_04310
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Entry
UCH007_04310 CDS
T03880
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
duc
Dehalococcoides sp. UCH007
Pathway
duc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
duc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
UCH007_04310 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
duc03021
]
UCH007_04310 (rpoA)
03400 DNA repair and recombination proteins [BR:
duc03400
]
UCH007_04310 (rpoA)
Enzymes [BR:
duc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
UCH007_04310 (rpoA)
Transcription machinery [BR:
duc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
UCH007_04310 (rpoA)
DNA repair and recombination proteins [BR:
duc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
UCH007_04310 (rpoA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
DUF2325
Motif
Other DBs
NCBI-ProteinID:
BAQ34389
UniProt:
A0A0C6E1D3
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All DBs
Position
401738..402730
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AA seq
330 aa
AA seq
DB search
MSDLAIPTISCTESDGKYGRFVVEPLEKGFGTTMGNSLRRILLSYLDGVAITRVRIDGIQ
HEFSALPKAKEDTLDFLLNLKNIRVESLSGLEGILYLRASGSKVVTAADIEPSNDFAVVN
PELYLLTLDSDDAVLNVELEVELGRGYRPPESTENTPIGTIPVDAIFTPIRKVNFTTEPM
HVGRETSLERLVLEVWTDGTVEPATAVSRSADILVKQFAALVSHSKVVAEVEASEPVKYA
IPEEKYNMPIEQLDLSVRAVNCLRHAGITTVGEVINRGTKELLTLRNFGLKSLTELEDRL
KTIGLSLNPEDELFEDAENTKKKNKGIDEA
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
gtgtctgatctagctatacccacaattagttgcaccgagagcgacggcaagtacggacgc
tttgtggtagaacctttggaaaaaggtttcgggactactatgggtaattcactgcgccgt
atacttcttagctatctggacggggttgccattacccgtgtccggatagatggtatccag
catgagttcagtgctctgcccaaggccaaagaagatacacttgattttttgctgaacctt
aaaaatataagggttgagagcctttcagggcttgagggtattttgtacctaagagcttcc
ggttctaaagtagttacggcagctgatattgagccctcaaatgattttgcggtagtaaat
ccggagctgtacctgcttacccttgattcggatgatgcagtattaaatgtggaacttgag
gtggaacttggccgaggctatcgtcctcctgaaagtaccgaaaatactcccatagggact
attccggtagatgccatttttactcccatccgcaaggtgaactttaccaccgagcctatg
catgtaggccgcgaaaccagccttgaacggttggtgcttgaggtctggactgacggtaca
gtagaacctgctactgcggtcagccgctcagcagacattctggtgaaacagtttgcggct
ttggttagccacagcaaggtagtggctgaagtagaggcaagcgagccggttaaatatgct
atacccgaagaaaaatataacatgcctattgaacagctggatttgtccgtcagggctgtt
aattgtttgcggcacgcaggtataaccactgtgggtgaggttataaacaggggaactaaa
gagttgcttactcttcggaattttggtcttaaatctctgaccgagcttgaggataggctc
aagactataggtctgtccttgaaccccgaagatgaactgtttgaagatgctgaaaacact
aagaagaaaaacaaaggcatagacgaagcctaa
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