Dehalococcoides sp. UCH007: UCH007_04630
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Entry
UCH007_04630 CDS
T03880
Symbol
holB
Name
(GenBank) putative DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
duc
Dehalococcoides sp. UCH007
Pathway
duc03030
DNA replication
duc03430
Mismatch repair
duc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
duc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
UCH007_04630 (holB)
03430 Mismatch repair
UCH007_04630 (holB)
03440 Homologous recombination
UCH007_04630 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
duc03032
]
UCH007_04630 (holB)
03400 DNA repair and recombination proteins [BR:
duc03400
]
UCH007_04630 (holB)
Enzymes [BR:
duc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
UCH007_04630 (holB)
DNA replication proteins [BR:
duc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
UCH007_04630 (holB)
DNA repair and recombination proteins [BR:
duc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
UCH007_04630 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNApol3-delta_C
AAA
AAA_22
AAA_5
AAA_16
Motif
Other DBs
NCBI-ProteinID:
BAQ34421
LinkDB
All DBs
Position
431501..432520
Genome browser
AA seq
339 aa
AA seq
DB search
MWRIIGQDKVVSFLGNSLGQDKLCHAYVFYGPSGVGKQRMALTFAQALNCQASQPPCQEC
LVCERILSGNHPDIIHLELLSAEDASDGKAKAEIGVKQVEDIQHAASLPPFEGKYKVFII
HHAEKLSQESSNRLLKTLEEPGSQNIFILLTADKSLLLPTVISRCQILELRYVEINLIRD
ALLEQGLAEEKAELLSHLSHGRIGWAMEAASNPEILEERKANLEKIILVLGQDEEERFDY
ASDISNLFAQNRMAAEAVLDMWLAVFRDMLLLKADASQNMTNIDYKDILYQACGGLGLVD
IRAGIDNILKAQIQLRANANPRLCLEVLMLSLPLVKEGL
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgtggcggataataggtcaggacaaggtcgtctcctttctgggtaacagcctcggtcag
gataaactgtgccatgcttacgtattttacggcccgtcaggggtaggtaaacagcggatg
gctctaacttttgctcaggcacttaattgtcaggcatcacagcccccgtgtcaggaatgt
ttggtttgcgagcgtattttatctggcaatcaccctgatattatccatctggagttgctt
tcggccgaagatgcctctgacggcaaggccaaagctgaaataggtgttaaacaggtagag
gatatccagcatgccgccagtttgcctccgtttgagggaaagtataaggtttttattatt
caccatgcagaaaaactttcacaggaatcttcaaatcgccttctaaagacactggaagag
cccggttcccagaatatatttattttgctgaccgctgataaatcacttttgctgcccact
gtaatttcgcgttgccagattctggagttaagatacgttgagataaaccttatccgggat
gctttgcttgaacagggtttggctgaagaaaaagccgagcttctgtctcacctgagccac
ggcagaataggctgggcgatggaagcagcgtcaaaccctgaaattttggaagaacgtaaa
gctaatttagaaaagattatattggtactggggcaggacgaagaagaacgttttgattat
gcttctgatatctcaaatctgtttgctcaaaaccgtatggcggctgaagctgtactggat
atgtggctagccgtatttagggatatgcttctgctgaaggctgatgccagccaaaacatg
actaatattgattataaagatatactatatcaggcctgtggcgggcttgggcttgtggat
atacgtgcgggtatagataatatacttaaggcccaaatccagctgcgggcgaatgccaat
cccagactgtgtctggaggtgcttatgcttagtttacccttggtaaaggaaggactataa
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