Dehalococcoides sp. UCH007: UCH007_06890
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Entry
UCH007_06890 CDS
T03880
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
duc
Dehalococcoides sp. UCH007
Brite
KEGG Orthology (KO) [BR:
duc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
duc03016
]
UCH007_06890
Enzymes [BR:
duc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
UCH007_06890
Transfer RNA biogenesis [BR:
duc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
UCH007_06890
Prokaryotic type
tRNA splicing ligases
UCH007_06890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BAQ34647
LinkDB
All DBs
Position
662949..664409
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AA seq
486 aa
AA seq
DB search
MTSPWQGILKKIDDYRWEIPQNYKVGMKVPGLVYASEHMLNQIWEEHAIEQIANVAFLPG
ITGKSMAMPDIHWGYGFPIGGVAATRISDGVISPGGVGFDINCGTRLLRTNLCVEEVQPK
INELLNGLFDKIPSGVGTGGNIKLSLTDIDNVMTRGGSWALEKGMGEAEDVKLTEESGSL
SGANPDEVSIKAKTRGSSQLGTLGSGNHFLEVQVVDEIFDTEVADVFGVQQTGQVLFLIH
TGSRGLGHQVCTDYVQLLNEMSKKYGINLPDRQLACAPLKSEDGQDYLAAMACAANYAWA
NRQCITQWAREVFMKIFEKGPRDLGMSQIYDVAHNIAKIEEHTVDGKIQNVCVHRKGATR
SFPAGRPEIPAVYRKVGQPVIIPGDMGRYSYVAVGTETAMHETFGSTCHGAGRILSRGAA
KKTASGAQLIDTLKTQGISIRVGDIGSLVEEASEAYKDVADVVEVTHKAGIARNIFKTRP
LGVIKG
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaccagcccgtggcagggaatactaaaaaaaatagatgattaccgttgggaaattcct
caaaactacaaagtaggtatgaaagtgcccggtctggtatatgccagtgagcatatgctt
aaccaaatatgggaggagcatgctatagagcagattgccaatgtagctttcttgcctggc
attaccggcaagtctatggcgatgcctgatatacactgggggtatggatttcctattgga
ggggtggctgctacccgaataagtgatggagtaatctcaccgggtggtgtaggttttgat
ataaactgcggaacccgccttttgaggacgaacctgtgcgtggaagaagtgcagccaaag
ataaacgaacttttaaatggactttttgacaaaataccctccggtgtgggtactggcggt
aatataaaactaagcctgaccgatattgataatgtaatgacccgcggtgggagctgggct
ttggaaaaaggtatgggcgaagccgaagatgttaaactgacggaagaatccggcagcttg
tccggtgcgaaccctgacgaagtttccattaaagccaagaccagaggttcatcccagctg
ggtacactgggttcaggcaaccactttttggaagtgcaggttgtagatgaaatatttgac
actgaagtggcagatgtatttggagttcagcaaacagggcaagtgctttttcttatccac
accggttcgcggggtttgggacatcaggtatgcactgattacgtacagctgttaaacgag
atgtctaaaaagtatggcataaatttacctgaccgtcagctggcctgtgccccgttaaaa
tcagaagatggtcaggattatctggcagcgatggcatgtgccgctaattatgcttgggct
aaccgccagtgcattacccagtgggcacgtgaagtatttatgaaaatatttgaaaaaggc
ccgcgtgatttaggtatgagccagatatacgatgtagcccataatattgccaagatagag
gaacatacggtagacggtaaaattcaaaatgtgtgtgtccaccgcaaaggtgctacccgc
tctttccctgccgggcggcctgaaataccagctgtttaccgaaaagtagggcagcctgtt
ataatacccggtgatatggggagatactcttatgtagcggtaggtaccgagactgccatg
catgaaacattcggatctacctgccatggtgccggcaggatactaagccggggtgcagcc
aaaaaaactgcgtccggtgcccagcttatagatacccttaagactcaggggataagtata
agggtaggagatattggcagtttggtggaagaagcatccgaggcctacaaagatgtggct
gatgtggtggaagtgactcacaaagctggtattgcccggaacatatttaaaaccagaccg
ttgggagtaataaaaggataa
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