Dehalococcoides sp. UCH007: UCH007_08030
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Entry
UCH007_08030 CDS
T03880
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
duc
Dehalococcoides sp. UCH007
Pathway
duc03410
Base excision repair
duc03430
Mismatch repair
duc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
duc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
UCH007_08030 (recJ)
03430 Mismatch repair
UCH007_08030 (recJ)
03440 Homologous recombination
UCH007_08030 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
duc03400
]
UCH007_08030 (recJ)
DNA repair and recombination proteins [BR:
duc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
UCH007_08030 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
UCH007_08030 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
UCH007_08030 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BAQ34761
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Position
772773..774473
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AA seq
566 aa
AA seq
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MKILANCLWKLKPAPPEKISQNFPYPPLISRLLHNRGIETAEEAELFLSSDRRLNHNPFL
FPDMEKAVSRIYIALLTGEKIVVYGDFDADGLTATAVLTTGIARLGGNVIPYIPHRVTEG
YGLKISALEKHRTEGVSLIISTDCGITAIPEIKRANKIGLDVIVTDHHTPLDELPPAYAI
INPKVPGETYPFKELAGVGVAYKLIQALYRNLGREDETRDLLDLVAIGTIADIVPILNEN
RYLVKEGIKLLNAEPRPGIIEMAQLSRLHLGEIEPESISWIMAPRLNAAGRLEHALAGYK
LLTATTISDSQELALWLENKNTERQQLTVHFVEKARARLDTQFLPALLIFIDAECPQGIS
GLVAGRLSDEYYRPSIVIKTNADSATGSCRSIPDFNIIQALSRFAHLFSHFGGHAQAAGF
TLPIENLDAFVQGISAYAEETLSGVELKPFIDIDIDTDLSELCPATLRELERLAPFGEAN
PKPVFLSRGLNITDYRSMGSNNEHLKLRIKHKGRFWDGVAFRQAKELNGFLQSPVDIVYN
LELDKWCGTDTLRLKIIDMSPAGTKI
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaatattggctaattgcctctggaaactaaaaccggcacctccggaaaagattagc
cagaattttccttatccgcccttgattagccgtttgcttcataacaggggtattgaaacc
gctgaagaagctgagttgttcctgtcatcagacaggcgtctaaatcataacccattctta
tttcctgatatggaaaaagcggtcagccgtatctacatagccttgctgacaggtgaaaaa
atagtagtatacggggattttgatgctgacgggctgacggctacagcagttttaaccact
ggcattgcccgtttgggagggaatgtaatcccttacattcctcaccgcgttactgaaggg
tatggtttaaaaatatccgcccttgaaaaacaccgaacagagggtgtttcacttatcatc
agcacagactgtggcatcaccgctatacctgaaataaagcgggcaaataaaatcggactg
gatgtgatagtcacagaccaccataccccgctagatgaactgccgcctgcatatgccatt
ataaaccccaaagtacccggcgaaacctacccttttaaggaactggcaggagttggggta
gcgtacaaacttatacaggctttataccgcaacttggggcgggaagatgaaaccagagat
ttactggacttggtagctataggcacaattgctgatatagtacccattctgaatgaaaac
cgttatctggtaaaagagggcatcaaactcctcaatgccgaaccccgtcccggcattatt
gaaatggcacagcttagccgtctgcatctaggggaaatagaaccggagagcatttcgtgg
ataatggcaccccgcctgaacgcagccggaaggctggaacatgctctggcaggatataaa
ctgcttaccgccaccaccataagtgattctcaagaactggcactctggcttgaaaacaaa
aacaccgaacgccagcagctgaccgttcattttgtagaaaaagccagagctaggctggat
acacagtttctgcctgcattacttatattcattgatgccgaatgtccgcaaggtatcagc
gggcttgtggcaggcagactgtccgatgaatattaccgtccgtctattgttataaagacc
aacgcagattcggctacaggcagttgccgcagcataccggatttcaatatcattcaggcc
ctcagccgctttgcacatctgttcagccacttcggcggacatgcccaggcagccggtttc
accctgcccatagaaaatttggatgcatttgtccaaggcatatccgcttatgccgaagaa
accctaagcggtgtagaactgaagccgtttatagatatagatatagacacagatctaagt
gaactctgcccggccaccctgcgtgaacttgagaggctggctccattcggagaggcaaac
ccgaaacctgtgttcctaagccgggggctgaatattactgattaccgctccatgggcagc
aacaacgaacacctgaaattgcgtattaaacataaaggccgcttctgggatggagtggcc
tttcgccaggcaaaagaactgaatggttttctccaatccccggtggatatagtgtataat
cttgaactggataaatggtgcggaacagatacactccgcctgaagataattgatatgtca
cccgcaggtaccaagatttaa
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