Dehalococcoides sp. UCH007: UCH007_11680
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Entry
UCH007_11680 CDS
T03880
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
duc
Dehalococcoides sp. UCH007
Pathway
duc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
duc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UCH007_11680 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
duc03021
]
UCH007_11680 (rho)
03019 Messenger RNA biogenesis [BR:
duc03019
]
UCH007_11680 (rho)
Transcription machinery [BR:
duc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
UCH007_11680 (rho)
Messenger RNA biogenesis [BR:
duc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
UCH007_11680 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
OB_RNB
ATPase_2
Spore_III_AA
AAA
Mor
NACHT
Motif
Other DBs
NCBI-ProteinID:
BAQ35126
LinkDB
All DBs
Position
complement(1131723..1132997)
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AA seq
424 aa
AA seq
DB search
MEIGQFELSELEKKTREELLDIAKEMGVNGVTALKKQDLVMRLIQVYTESQGNVFCSGIL
EIMPDGYGFLRQASLLPSSSDIYVSQSQIRRFGLRTGDMVIGQGRPAKPGEKYYSLLRVE
AINDLNPEMAKRRPNFGALVPTFPDRLINLETSPTELATRLINLIAPIGRGQRGLIVSPP
KAGKTTILKNIANATATNYNDIHIMVVLIGERPEEVTDMRRHVRGEVMAATFDEPVENQT
RVAELALERAKRMVESGKDVFILLDGITRLTRAYNLAMPSSGRTLSGGIDPVALHPAKKF
FGAARNTEEGGSLTIIATCLVETGSRMDDLIYEEFKGTGNMELHLERRLAERRVFPALDI
SRSSTRREELLLGDNYKQVQLLRRMVAIIADDANHYTEVNERLLDRLRRSRNNADFLANL
QKEM
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcggacaatttgagctgagtgaacttgaaaagaagactcgggaagagcttctg
gatattgccaaagaaatgggtgtgaacggggtgactgcccttaaaaagcaggacctggtg
atgcgccttattcaggtttataccgaatcacaggggaatgtattctgttcgggtattctg
gaaataatgccggacggatacggctttctgcggcaggcctctttattgcccagctcgtca
gacatatacgtgtctcagtcccagatacgccgtttcgggcttcgtactggtgatatggta
atagggcagggacggcctgccaagccgggtgaaaaatattacagccttctgcgggtggaa
gccataaatgacctcaatcccgaaatggccaaacgccgcccgaattttggtgctttagtt
cccacttttcctgaccgcctgataaatctggagacctctcccaccgaacttgccacccgc
ctcataaacctgatagcccccataggccggggacagcgcgggcttattgtttccccgccc
aaagccggcaagaccactattcttaaaaacatagcgaatgcaaccgctaccaattataac
gatatacatataatggtagtccttataggtgaacgccctgaagaagtaaccgacatgcgc
cgccacgtacggggcgaagttatggccgccacctttgacgaaccggtggaaaaccagacc
agggtagccgaactggcactggaacgggcaaagcgtatggtagaaagcggcaaagacgtc
tttatactgctggacggtattacccgccttacccgcgcctacaatctggctatgccttca
tcaggccgcaccctttccggcggtattgacccggtcgccctccaccccgccaagaaattc
ttcggggctgcccgcaatactgaggaaggcggttcgcttaccatcattgccacctgtctg
gtggaaaccggcagccgcatggatgaccttatttacgaagagttcaagggcaccggcaat
atggaacttcatctggaacgccgcttggccgaacgccgtgtattccctgccttggatata
tcccgctcaagcacccgccgtgaagagctgctgctgggtgataactacaagcaggtacag
cttttgcggaggatggttgccattatcgctgatgacgctaaccactatacagaggttaat
gagcgcctgctggaccgcctgcgccgctccagaaacaatgctgacttcctggctaacctc
cagaaagaaatgtaa
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