Dehalococcoides sp. UCH007: UCH007_12090
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Entry
UCH007_12090 CDS
T03880
Symbol
ligT
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
duc
Dehalococcoides sp. UCH007
Brite
KEGG Orthology (KO) [BR:
duc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
duc03016
]
UCH007_12090 (ligT)
Enzymes [BR:
duc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
UCH007_12090 (ligT)
Transfer RNA biogenesis [BR:
duc03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
UCH007_12090 (ligT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
BAQ35167
UniProt:
A0A0C6EQL5
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All DBs
Position
1171201..1171782
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AA seq
193 aa
AA seq
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MAEELVRTFIAVELPPELKTALGSFQNSLSIPAQAVKWVNPESMHLTIKFLGDTPLSQIS
NIIKGLEKAAQVCHAFTLCTNHIGAFPSLSNPKVIWLGLEGETGKLNALFAEVEKNIAGP
GFPAEQREFAPHLTLGRLRESASKIDLQTTAEILKTTPPVPKTSFKASHICLFKSQLLPA
GPIYTRLAQISLA
NT seq
582 nt
NT seq
+upstream
nt +downstream
nt
ttggctgaagaacttgtccgcacgtttattgccgtagaactgccgcctgagcttaaaacc
gcactcggcagtttccaaaattccctttccatacccgcacaagctgtcaaatgggtaaac
cccgaatcaatgcatctaaccatcaaatttttgggggataccccgttaagccaaatatca
aatatcataaaagggctggagaaagccgcacaggtctgccacgcctttaccctatgcacc
aaccatataggggctttcccctcactttcaaacccgaaggtaatctggctggggctggag
ggggaaaccggtaaacttaatgccctctttgcagaggttgaaaaaaatattgcagggccg
ggatttccggcagaacaaagagaattcgccccccacctgaccttaggacgtcttagggaa
agtgcttccaaaattgacctgcaaaccactgccgaaatccttaaaaccacaccccctgtt
cctaaaaccagtttcaaagcctcgcatatctgcctctttaaaagccagcttttacccgca
gggccaatatacaccagactggctcaaatcagcctcgcctag
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