Dehalococcoides sp. UCH007: UCH007_14770
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Entry
UCH007_14770 CDS
T03880
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
duc
Dehalococcoides sp. UCH007
Pathway
duc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
duc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UCH007_14770 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
duc03019
]
UCH007_14770 (rny)
Messenger RNA biogenesis [BR:
duc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
UCH007_14770 (rny)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
LapA_dom
fvmYukDl_N
BTBD16_C
DUF4407
DUF668
Motif
Other DBs
NCBI-ProteinID:
BAQ35435
UniProt:
A0A0C6EKV9
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Position
1444558..1446141
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AA seq
527 aa
AA seq
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MFEFFMETAPTTTTGLPLSAILAIFFSFIIGIVFGGMALFVFRGFIMNRQLRIAQRKATK
MLADSKTEAKDVLVEAKHEADKVRNSAESELKERRSELAKQENRVMQKTEALDRKLENLE
QREQSLTNREKSIDETQSQIEEIRTAELKRLEEVANMTTEQAKSSLLEMLEGEMQQETSR
RLREWEIKIKAEADEKAREVVSQAIQRCASDVVTETTTNVVPLPSDEMKGRLIGREGRNI
RALEQATGVDLIIDDTPEAVTISSFDPVRREVARQALSKLIIDGRIHPARIEEVVTKAKE
EVEAAMIASGEQAAYQAGVHGLRPEIIKVMGRLKYRTSYGQNVLQHSIEVAQMSGMIGSE
LGVNVTLARRAGFLHDIGKAVDRDVEGTHTQIGADMVKQWEKSPEVIKGVAEHHFDTPTV
SIWGFIVSAADAISSARPGARRESLENYIKRLKALEEIADSFKGVEKSFAIQAGREVRIM
VKPDEIDDLGAMRLARDIVKKIEDGLEYPGQIKVTVIRETRSVDFAK
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgtttgagtttttcatggagacagcgccgacaacaactaccggcctgcctttgtctgcc
attctggcaatcttttttagttttattataggtattgtattcggcggcatggcccttttt
gtattcaggggctttataatgaaccgccagctccgcatcgcccagcgaaaagcaaccaaa
atgctggctgactctaaaacggaagctaaagatgtgctggtggaagccaaacacgaagcg
gacaaggtccgcaattccgccgagtctgagcttaaagaacgccgttctgaactggctaaa
caggaaaaccgggttatgcagaagaccgaagccctggaccgtaagcttgaaaatcttgaa
cagcgcgaacagtctttgaccaaccgggaaaaaagtattgacgaaacccagtctcagatt
gaagaaatacgcacagccgaactgaaacgtctggaagaagtggccaacatgactactgag
caggccaaatcaagtctgcttgaaatgctggaaggtgaaatgcagcaggagacctcccgc
cgcctgcgtgagtgggagataaaaataaaagccgaagcggatgaaaaagcccgcgaggtt
gtttcccaggctatccagcgttgtgcctctgatgtagttaccgaaactaccaccaatgtc
gtacccttgccaagcgatgaaatgaagggcaggctgattggccgcgaaggccgcaatata
cgggctctggagcaggccaccggcgtagacctaattatagatgacactccggaggcagtt
actatctccagttttgacccggtaaggcgtgaagttgccagacaggcactttcaaaactt
atcatcgacgggcgtattcatccggcccgtattgaagaagtggtaaccaaagccaaagag
gaagtagaagccgctatgatagcttccggcgaacaggccgcttatcaggcaggcgttcac
ggactgcggcccgaaataatcaaagtaatgggacggctgaaataccgcaccagttacgga
cagaatgttcttcagcacagtatagaggtagcccagatgtccggcatgataggcagcgag
ttgggtgtaaatgttacccttgccagacgggccggcttcctgcatgacataggcaaagcg
gttgaccgtgacgtggaaggcactcatacccagataggtgcggatatggttaaacagtgg
gaaaaatcacccgaggttatcaagggtgtggctgaacaccattttgacactcccactgtc
tccatctggggttttatagtatccgccgcagacgccatttcttcggccagacccggcgcc
cgccgcgaatcactggaaaactatatcaaacgcctcaaggccctcgaagaaattgccgac
agcttcaaaggggttgaaaaatcctttgccatacaggccgggcgtgaagtgcgcatcatg
gttaaacctgacgagattgatgacctgggtgctatgcggctggccagagatattgtcaag
aagattgaagacgggctggagtaccccggacagattaaggttaccgttatccgggaaacc
aggtccgtagactttgccaagtaa
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