Duganella dendranthematis: HH213_01855
Help
Entry
HH213_01855 CDS
T06560
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dug
Duganella dendranthematis
Pathway
dug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HH213_01855 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dug03019
]
HH213_01855 (pnp)
03016 Transfer RNA biogenesis [BR:
dug03016
]
HH213_01855 (pnp)
Enzymes [BR:
dug01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HH213_01855 (pnp)
Messenger RNA biogenesis [BR:
dug03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HH213_01855 (pnp)
Transfer RNA biogenesis [BR:
dug03016
]
Prokaryotic type
tRNA degradation factors
HH213_01855 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
S1_RRP5
KH_2
KH_KhpA-B
OB_RRP5_4th
KH-I_KHDC4-BBP
PCB_OB
DUF5813
Motif
Other DBs
NCBI-ProteinID:
QJD88964
UniProt:
A0ABX6M3S8
LinkDB
All DBs
Position
complement(381691..383811)
Genome browser
AA seq
706 aa
AA seq
DB search
MFNKVTKTFQYGQHTVTLETGEIARQASGAVMVSIEDTVVLATVVARKDAKPGQDFFPLT
VDYLEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGYMNEVQVVIHVLSV
NPEIDPDIAAMIGASAALCVSGVPFNGPIGAARVGYANGQYILNPTVEQLKTSQMDLVVA
GTETAVLMVESEAQQLSEEIMLGAVVFGHTEMKAVIDAIHDLVRDGGKPEQVWTAPAKNE
ALIGRVAHFAESKIREAYQTRDKQARTDKLRAMSSQVVADLAAEAAAAGAAAPDNVEVGN
ILFDMESKTVRSQILEGEPRIDGRDTRTVRPIAIRTSVLPRTHGSALFTRGETQALVVAT
LGTARDSQKIDALMGEYTDDFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAAL
PSADEFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMKEHVAGIAMGLIKEGGRF
AVLSDILGDEDHLGDMDFKVAGTRNGITALQMDIKIQGITKEIMQVALAQAKEGREHILG
EMQKAVPSVKTELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGVV
TIASVDAAAGQEAKRRIEELTASVEVGKTYDGVVLKLLDFGAIVQVMPGKDGLLHISQIA
NERVNAVADYLKEGQAVRVKVLETDDRGRLKLSMKAAAEEAAAAAQ
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgtttaataaagttacgaaaaccttccagtacggtcaacacaccgtcacgctggaaact
ggcgagatcgctcgtcaggcctccggcgcggtgatggtgtcgattgaagacaccgtagtg
ctggctaccgtggtggcgcgcaaagacgcgaaaccaggccaggacttcttcccgctgacc
gtcgactaccttgagaaaacctatgctgccggtaaaatcccgggcggtttcttcaagcgt
gaaggtcgtccttcggaaaaagaaacgctgacatcccgcctgatcgaccgtccgattcgt
cctctgttcccagagggctacatgaatgaagtgcaagtcgtcattcacgtgctgtcggtc
aacccagaaatcgatccagacatcgccgcgatgatcggtgcttcggccgcgctgtgcgtg
tcgggcgtaccgttcaacggcccaatcggcgccgcccgcgtgggttacgccaacggccag
tacatcctgaacccaaccgtcgaacaactgaaaacctcgcagatggacctggtggttgcc
ggtaccgaaaccgccgtgctgatggtggaatcggaagcgcagcagctgtcggaagaaatc
atgctgggcgccgtggtcttcggccacaccgaaatgaaggccgtgatcgacgcgattcac
gacctggtacgcgacggcggcaagcctgagcaagtctggaccgcaccagccaaaaacgaa
gcgctgatcggccgcgtggcccatttcgccgagtcgaaaatccgcgaagcctaccagacc
cgcgacaagcaagcccgtaccgacaagctgcgcgcgatgtcgtcgcaagtggtggcggac
ctggcggcggaagctgccgctgccggcgctgcggccccggacaacgtcgaagttggcaac
atcctgttcgacatggaatcgaaaaccgtgcgttcgcagatcctcgaaggcgaaccccgc
atcgacggccgcgacacccgcaccgtgcgtccaatcgcgatccgcacctcggtgctgccg
cgtacccacggttctgccctgttcacccgtggcgaaacccaggccctggtcgtagcgacg
ctgggcaccgcccgcgattcgcagaagatcgacgcgctgatgggcgagtacaccgatgac
ttcatgctgcactacaacatgccaccgttcgccaccggcgaaaccggccgcgtcggaacg
ccgaagcgccgcgagatcggccacggccgtctggccaagcgcgcgctgatcgccgcgctg
ccgtcggctgacgagttcagctactcggtgcgtctggtgtcggaaatcaccgaatcgaac
ggttcgtcgtcgatggcctcggtgtgcggcggctgcctggcgctgatggatgccggcgtg
ccgatgaaagagcacgtggccggtatcgccatgggcctgatcaaggaaggcggccgtttc
gccgtgctgtccgacattctgggtgacgaagatcacctgggcgacatggacttcaaagtc
gctggtacccgcaacggtatcaccgcactgcagatggacatcaagatccagggcatcacc
aaggaaatcatgcaagtggcgctggcgcaagccaaagaaggccgcgagcacatcctgggc
gaaatgcagaaggccgtgccgagcgtgaagaccgaactgtcggacttcgcaccacgcctg
atcaccatcaagatcaacccagagaagatccgtgacgtgatcggcaagggcggcgccgtg
atccgcgcgctgaccgaagagaccggcacccagatcgacatcagcgacgaaggcgtggtc
accatcgcttccgtcgacgctgctgccggccaggaagccaagcgccgcatcgaagaactg
accgcctcggtcgaagtgggcaagacctacgacggcgtggtcctgaagctgctggacttc
ggcgcgatcgtgcaagtgatgccaggtaaagatggtctgctgcacatctcgcagatcgcc
aacgagcgcgtgaacgccgtggccgactacctgaaagaaggccaggcagtgcgcgtcaag
gttctggaaaccgatgaccgcggccgcctgaaactgtcgatgaaagctgctgctgaagaa
gctgccgctgctgcacagtaa
DBGET
integrated database retrieval system
