KEGG   Duganella dendranthematis: HH213_02355
Entry
HH213_02355       CDS       T06560                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
dug  Duganella dendranthematis
Pathway
dug02024  Quorum sensing
dug03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dug00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HH213_02355 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    HH213_02355 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dug03019]
    HH213_02355 (hfq)
   03036 Chromosome and associated proteins [BR:dug03036]
    HH213_02355 (hfq)
Messenger RNA biogenesis [BR:dug03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     HH213_02355 (hfq)
Chromosome and associated proteins [BR:dug03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    HH213_02355 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1 SRP14
Other DBs
NCBI-ProteinID: QJD89056
UniProt: A0ABX6M507
LinkDB
Position
complement(488462..488698)
AA seq 78 aa
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGHIESFDQYVVLLRNTVTQMVYKHAI
STVVPARAVNLNIENEAE
NT seq 237 nt   +upstreamnt  +downstreamnt
atgagcaataaagggcaactgttacaagacccattcctgaacgccttgcgcaaggaacac
gttcctgtttcgatctacctggtcaacggcatcaagctgcaaggccacatcgaatcgttc
gaccagtacgtcgtactgctgcgtaacactgtgacccagatggtgtacaagcacgccatc
tccaccgtggtgccggcgcgcgccgtcaacctcaatattgaaaacgaagcggaataa

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