Duganella dendranthematis: HH213_03865
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Entry
HH213_03865 CDS
T06560
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
dug
Duganella dendranthematis
Brite
KEGG Orthology (KO) [BR:
dug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dug03019
]
HH213_03865 (hrpA)
Enzymes [BR:
dug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HH213_03865 (hrpA)
Messenger RNA biogenesis [BR:
dug03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HH213_03865 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
AAA_22
nSTAND3
T2SSE
nSTAND_NTPase5
NACHT
AAA_30
TsaE
AAA_11
PhoH
SLFN-g3_helicase
ABC_tran
SRP54
Myosin_head
AAA_23
ResIII
Motif
Other DBs
NCBI-ProteinID:
QJD93975
UniProt:
A0ABX6MIX8
LinkDB
All DBs
Position
complement(819309..823316)
Genome browser
AA seq
1335 aa
AA seq
DB search
MRGGGRGPRTPPGTENRPRREPKPRLTPEQLAAREAERNFRNPLPPITFPEDLPVSGRRQ
EIAEALQNNQVVIVSGETGSGKTTQLPKICLELGRGQKGMIGHTQPRRIAASSTAKRIAA
ELGSPLGEHVGFKVRFADTLQKGAYIKLMTDGILLTETQSDPLLKAYDTIIIDEAHERSL
NIDFLLGYLKQLLPRRPDLKIIITSATIDADRFARHFGTPEKPAPVIEVSGRLYKVEVRY
RPIESDVVGGANAPAVANAEGKGARTAAAREKRDLMDAVIDGVDEVARIGSGDILVFLPG
EREIRDAAEALRKHHPPHVEILPLFARLSAEEQERVFKLTNARRIVLSTNVAETSLTVPG
IRYVVDAGLARVKRYSYRNKVEQLQIEPIAQSAANQRAGRCGRVADGVCIRLYDEQDFLQ
RPKFTEPEILRSSLASVILRMKTLHLADVETFPFIEPPLARAIADGYQLLQELGAVDEYN
QITPLGTKLAKLPLDPRVGRMILAALDNVCLTEVLIIASALSVQDPRDRPMEHQQAADEA
HKKFADEKSEFLSYIKIWRWFENAIEHKKTNRQLQDNCRTNFLSQLRLREWRDVHSQLLT
IVKEQGWRLNEAPATYENLHMALLTGLLGNVGFKMEDDPGFLGARGIKFNIWPGSSLSKK
PGKWIMAAELVDTTRLYARCIAQIQPEWLEKIGGHLLKKSWGEPRWEKKSAQVTASERAT
LYGLVVYSQRRINYGLFNPAEAREIFIRDALVGGDYETRAPFFAHNHKLIKEIENLEHKS
RRQDVLVDDELIAAFYDKLLPADVVNGAGFEKWHKDVTAQEPKLLFLNRDELMRHEAAGV
TTDLFPKKMSVSGLELALTYHFEPGSVRDGVTLAVPLYALNQLSRERCEWLVPGMLKEKV
HLLLKSLPQKLRRHCVPLPDYAAKFCERVEEKHAFGRGELIDAIIADIRKEITVTPLTTD
FKPETLPAHHFMNFKVIDEHGRQLDMGRNLATLQAEYGTQARESFQKMAEASGPQSTVAA
RAVVPAKAVAPAKAGAHATPDAAKSSAPASNITLTNLTSWTFGELPELLEIAQGKLTLIG
FPALVDKVTHCDLEVFDDPTVAARTHRVGLRRLFALQMKDQIKFIEKSIPNLQQMGMQFM
SMGTQEELREQIINKALDIACLQDPLPIDAASFAKRKDEGKSRLVLLVNEIARLLSQVLT
EFHGLPKRLQGLSQQAAQDMQQQLQGLVHKRFLQENDYSQLAHFPRYLKAMNVRIEKLRG
DPARDTKLMAEWQQAAAAYLRASRDKSAGKNTDPKMVEFRWMLEELRVSLFAQELRTPMP
VSAKRLLKVWESMQR
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
gtgcggggtggcgggcgcggaccacgcacgccgccgggcaccgaaaaccgtccgcgccgc
gagcccaagcctcggctcaccccggagcaactggccgcgcgcgaggccgagcgcaatttc
cgcaatccgctgccgccgatcaccttcccggaagacctgccggtctccggccgccgccag
gaaatcgccgaagcgctgcaaaacaaccaggtcgtcatcgtctccggcgaaaccggttcc
ggtaaaaccacccagctgccgaagatctgcctggaactgggacgtggccaaaaaggcatg
atcggccacacccagccgcgccgcatcgccgcctcgtcgaccgccaagcgcatcgccgcg
gaactgggctcgccgctgggcgaacacgtaggcttcaaggtccgcttcgccgacacgctg
caaaaaggcgcctacatcaagctgatgaccgacggtatcctgctgaccgaaacgcaaagc
gacccgctgctcaaggcctacgacaccatcatcatcgatgaagcgcacgaacgcagcctg
aacatcgacttcctgctcggctacctgaaacagctgctgccgcgccgtccggacctgaag
atcatcatcacctcggcgaccatcgacgccgaccgcttcgcgcgccactttggcacgccg
gagaagccggcgccggtgatcgaggtctcgggccgcctgtataaagtggaagtgcgctat
cgcccgatcgaaagcgacgtggtgggtggggcaaatgcgccggcagtggccaacgccgaa
ggcaagggcgcgcgcaccgccgccgcccgcgaaaagcgcgatctgatggacgccgtgatt
gacggtgtggacgaagtagcgcgcatcggctccggcgacatcctggtgttcctgcccggc
gagcgcgaaatccgcgacgccgccgaagccctgcgcaagcaccatccgccgcacgtggaa
atcctgccgctgttcgcccgcctgtcggccgaagagcaggagcgcgtattcaaactgacc
aatgcgcgccgcatcgtcctgtccaccaacgtggccgagacctcgctgaccgtgcccggc
atccgctacgtggtggatgccggcctggcgcgcgtgaagcgctacagctaccgcaacaag
gtagagcagttgcagatcgagccgatcgcgcaatcggccgccaaccagcgcgccggccga
tgcggccgcgtggccgatggcgtctgcatccgcttgtacgacgaacaggacttcctgcag
cggcctaaatttaccgagccggagatcttgcgctcgtcgctggcctccgtcatcctgcgc
atgaagaccttgcatctggccgatgtggagaccttcccgttcatcgaaccgccgctggcg
cgcgccatcgccgacggctaccagctgctgcaggaactcggtgcggtcgatgaatacaac
cagatcacgccactcggcaccaagctggccaagctgccgctggacccgcgtgtgggccgc
atgattctggcggcgctggacaacgtctgcctgaccgaagtgctgatcatcgcgtcggca
ctgtcggtgcaggatccgcgcgaccggccgatggagcaccagcaggccgccgacgaagcg
cacaagaagttcgccgacgagaagtccgaattcctcagctatatcaagatctggcgctgg
ttcgaaaacgcgattgagcacaagaagaccaaccgccagctgcaggacaactgccgcacc
aacttcctgtcgcaactgcgcctgcgcgaatggcgcgacgtgcactcgcaactgctcacc
atcgtcaaagagcagggctggcgcctgaacgaagcgccggccacttacgagaacctgcac
atggcgctgctgactggcttgctgggcaatgtcggcttcaagatggaagacgatcccggc
ttcctcggcgcgcgtggcatcaagttcaatatctggccgggttcttcgctgagcaaaaag
ccgggcaaatggatcatggcggcggagctggtggacaccacgcgcctgtacgcgcgctgc
atcgcgcagatccagccggagtggctggaaaagatcggtggccacctgctgaaaaaatcg
tggggcgagccgcgctgggagaaaaaatcggcgcaggtcaccgcgtccgagcgcgccacc
ttgtatggcctggtggtgtacagtcagcgccgcatcaactacggcttgttcaatcccgca
gaggcgcgcgagatctttattcgcgatgcgctggtcggcggcgattacgagacgcgcgcg
ccgttcttcgcccacaaccacaagctgattaaagagatcgagaacctcgaacacaagtcg
cgccgtcaggacgtgctggtggacgatgaactgatcgccgccttctacgacaagctgctg
ccggccgatgtggtcaacggcgccggcttcgagaagtggcacaaggacgtgacggcgcag
gagcccaagctgctgttcctgaaccgcgatgagctgatgcgccacgaggcggccggcgtg
accaccgacctgttcccgaagaagatgagcgtatccggcctggagctggcgctgacctat
cacttcgaaccgggcagcgtgcgcgatggggtgacgctggcggtgccgctgtatgcattg
aatcagctgtcgcgcgaacgctgcgaatggctggtgccgggcatgttgaaggagaaggtg
catttgctgctgaaatccctgccgcagaaactgcgtcgccattgcgtgccgctgccggat
tacgccgccaagttctgcgagcgcgtggaggagaagcacgctttcggtcgcggcgagttg
attgacgcgatcatcgccgatatccgcaaggagatcacggtaacgccgctgaccaccgac
ttcaagccggaaacgctgccggcgcaccacttcatgaacttcaaggtgatcgacgagcat
ggccgccagctggacatgggccgcaacctcgccactttgcaggcagaatacggcacgcag
gcgcgcgagagcttccagaagatggcagaggcttccggcccgcaatcgaccgtcgccgcg
cgcgccgtggtgccagcgaaggccgtcgcaccggcgaaagccggcgcccatgcgacgcct
gatgcagccaagtccagcgcgccagccagcaacattacgctgaccaacctgacctcgtgg
accttcggcgaactgccggaactgctggaaatcgcccagggcaagctgacgctgatcggc
ttcccggcgctggtggacaaggtcacgcactgcgatctggaagtcttcgacgatccaaca
gtggcggcgcgcacgcaccgcgtcggcttgcgccggttgttcgccttgcagatgaaggat
cagatcaagttcatcgaaaagagcatccccaacctgcagcaaatgggcatgcagttcatg
agcatgggcacgcaggaagagctgcgcgagcagattatcaacaaggcgctggacatcgcg
tgcctgcaagacccgctgccgatcgacgccgccagtttcgccaagcgcaaggacgaagga
aaatcgcgcctggtgctgctggtgaacgagatcgcgcgcctgctgtcgcaagtgctgacc
gaattccacggcctgccgaaacgcctgcaaggcttgtcacagcaggcggcgcaggacatg
cagcagcagttgcaaggcctggtgcacaagcgcttcctgcaggagaacgactacagccag
ctggcgcacttcccgcgctatctgaaggcgatgaatgtgcggatcgaaaagctgcgcggc
gatcccgcgcgcgataccaagctgatggcggagtggcagcaagccgctgcggcttacctg
cgtgcgagccgcgacaaatcggccggcaagaacaccgatccgaagatggtggaattccgc
tggatgctggaggagctgcgcgtgtcgctgtttgcgcaggagctgcgcacgccgatgccg
gtatcggccaagcgcttgcttaaagtatgggagtccatgcaacgctga
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