Duganella dendranthematis: HH213_05895
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Entry
HH213_05895 CDS
T06560
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
dug
Duganella dendranthematis
Pathway
dug03030
DNA replication
dug03430
Mismatch repair
dug03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HH213_05895 (dnaE)
03430 Mismatch repair
HH213_05895 (dnaE)
03440 Homologous recombination
HH213_05895 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dug03032
]
HH213_05895 (dnaE)
03400 DNA repair and recombination proteins [BR:
dug03400
]
HH213_05895 (dnaE)
Enzymes [BR:
dug01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HH213_05895 (dnaE)
DNA replication proteins [BR:
dug03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HH213_05895 (dnaE)
DNA repair and recombination proteins [BR:
dug03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HH213_05895 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
QJD89674
UniProt:
A0ABX6M6F5
LinkDB
All DBs
Position
complement(1263018..1266575)
Genome browser
AA seq
1185 aa
AA seq
DB search
MNQVVHPVVANEQAVAGSAVAPVGPSFVHLRVHSEYSIVDGLVRIDDLIKQAVKDKQGAL
AVTDLANMFGMVKFYKAARGKGIKPVVGVDVWITNDDNRDKPSRLMLFAKNRMGYLQLCE
LLSQAWLTNQYKGRAEIRTEWLAELTSKTYALLPDDNPANGLIVLSGAHFGDIGTAIENG
NPALAEANAQKWAALFPGHFYIEIQRAGQANQEMQVRHSIALAAKLGLPVVATHPVQFVS
KDEYIAHEARVCIAEGEMLANAKRVKRFNEQMRFLTQAEMAELFHDLPAALQNSVEIAKR
CNLTLTLGKPQLPNFPTPGMTIDDFLRAETRKGLEERLEQLYPDPVKREANRQRYEERLE
FENNTIINMKFPGYFLIVAEFIQWGKNNDVPIGPGRGSGAGSLVAYALKITDLDPLKYNL
LFERFLNPERVSMPDFDIDFCQEKRELVIQHVKDLYGRDAVSQIATFGTMAAKGAIRDVG
RVMDFGYNFCDGVSKLIPFKPGKPVSIAEAIEEEPMLKERQQNEEEVAQLLDLAQQVEGI
TRNIGMHAGGVLIAPGKLTDFCPLYTQGGDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTI
LDRAVRYIKALDPEEKDFDLSKLPLNDRPSYDLLTKAKTVAVFQLESRGMQGMLKDARPD
RFEDIIALVALYRPGPMDLIPDFCKRKHGEKFDYPDPRTESILSETYGIMVYQEQVMQMA
QIVGGYSLGGADMLRRAMGKKKAEEMAEHREIFRAGAAKDGLSTQKADEIFDLMEKFAGY
GFNKSHAAAYALLSYHTAYLKAHHPAAFMAANMSLAMEDTEKVKILVEDSIDICGLTILP
PDINKSDFRFMPDGPPPSVTGKKVTQIRYGLGACKGAGQNAIEAIIAARNADGPFTSLFD
FCKRVDKKQINRRTIESLIRAGAFDCLGVDRAVLLASVSFAMEYADQQAKSANQVSLFGG
DDSDLEPPPDYVKATPFTDRQRLAEEKMALGFYLSGHMFDSFAPEARRFSRTKLADLEPS
RDPRMLCGVITGIRPQMTQRGKILIVTLDDKSAVVEVTVYAEVFEEHKHMFKEDEFLAVI
GKVSEDRFNGGLRISAEKVFDIISSRVKHGKQLSMALPVSVDAKKVAEVLAPYRQTDGLP
ISARIQPQGVSCVLQLGEGWRVAPSDELQLALQQVLGAREVAVEY
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggtagtacacccagtggtagcaaatgaacaagcagtagccggcagtgccgtg
gcgccggtgggaccgtcttttgtccatttgcgcgtccattcggagtattccatcgtcgac
gggctggtgcgcatcgacgatctgatcaagcaggctgtcaaggacaagcagggcgcgctg
gcggtcaccgatcttgccaatatgttcggcatggtcaagttctacaaggcggcgcgcggc
aagggcatcaagccggtggtcggcgtcgatgtctggatcaccaatgacgacaaccgcgac
aagccgtcgcgcctgatgctgttcgccaagaaccgcatgggctatctgcagctgtgcgag
ctgctgtcgcaagcctggctgaccaaccagtacaagggccgggccgagatccgtaccgaa
tggctggccgagctgacctccaagacctatgcgctgctgcccgacgacaacccggccaac
ggcctgatcgtgctgtccggcgcccatttcggcgacatcggcaccgccatcgaaaacggc
aacccggcgctggccgaagccaacgcacagaagtgggcggcgctgttccccggccatttc
tacatcgagatccagcgcgccggtcaggccaaccaggagatgcaggtacgccactcgatc
gcgctggcggccaagctgggtctgccggtagtggcgacccatccggtgcagtttgtcagc
aaggacgagtacatcgcccacgaggcgcgcgtctgtatcgccgagggcgagatgctggcc
aacgccaagcgcgtcaagcgcttcaacgagcagatgcgcttcctgacgcaggccgagatg
gccgagctgttccacgacctgccggccgcgttgcagaattcggtggaaatcgccaagcgc
tgcaatctgacgctgaccctgggcaagccgcagctgccgaacttcccgacgcctggcatg
accatcgacgatttcctgcgtgccgaaaccaggaagggtctggaggagcggctggagcag
ctgtatccggacccggtcaagcgcgaggccaaccgccagcgctacgaggagcggctggag
ttcgagaacaacaccatcatcaacatgaagttccccggctacttcctgatcgtggccgag
tttatccagtggggcaagaacaacgatgtgccgatcggcccgggccgcggttcgggcgcc
ggttcgctggtggcgtatgcgctgaagattaccgatctggatccgctgaagtacaacctg
ctgttcgagcgtttcctcaaccctgagcgggtgtcgatgcccgacttcgatattgacttc
tgccaggaaaagcgcgagctggtgatccagcacgtgaaggatctgtacggccgcgacgcg
gtgtcgcagatcgccacgttcggtaccatggcggccaagggcgcgatccgcgacgtcggc
cgcgtgatggatttcggctacaacttctgcgacggcgtctccaagctgattccgttcaag
ccgggcaagccggtgtcgattgccgaggcgatcgaggaagagccgatgctcaaggagcgc
cagcagaacgaggaagaagtggcgcagctgctggacctggcgcaacaggtcgaaggcatc
acccgtaacatcggcatgcacgccggtggcgtgctgatcgcgccgggcaagctaaccgat
ttctgtccgctgtacacgcagggcggcgacggcggcgtggtgtcgcagtacgacaaggac
gacgtggaggccgtgggcctggtcaagttcgacttcttgggtctgaccacgctgaccatt
ctcgaccgcgcggtgcgctacatcaaggcgctcgatccggaggaaaaagatttcgacctg
tccaagctgccgctgaatgaccgtccttcatacgacctgctgaccaaggccaagacggtc
gcggtattccagctggagtcgcgcggcatgcagggcatgctgaaggatgcgcgtcccgac
cgcttcgaggacattatcgcgctggtggcgctgtaccgtccgggcccgatggacctgatc
cccgacttctgcaagcgcaagcacggtgaaaagttcgactatcccgatccgcgcaccgaa
tcgattctgtccgaaacctacggcatcatggtgtatcaggagcaggtgatgcagatggcg
cagatcgtcggcggctactcgctgggcggcgccgacatgctgcgccgcgcgatgggtaag
aaaaaagccgaggagatggccgagcaccgcgagatcttccgcgccggcgccgccaaggat
ggcctgagcacgcaaaaagccgacgagatcttcgacttgatggagaagttcgcgggctac
ggcttcaacaaatcgcacgcggccgcctacgcgctgctgtcgtatcacacggcctacctg
aaggcgcaccatccggccgctttcatggcagccaatatgtcgctggcgatggaggacacc
gagaaggtcaagattctggtcgaggactcgatcgacatctgcggcctgaccatcctgccg
ccggacatcaacaagtccgacttccgcttcatgccggacggcccgccgccgtcggtcacc
ggcaagaaggtcacgcagatccgttacggcctgggcgcctgcaagggtgcgggccagaac
gcgatcgaggcgatcatcgccgcgcgcaatgccgacggtccgttcaccagcctgttcgat
ttctgcaagcgcgtcgacaagaagcagatcaaccgccgcaccatcgaatcgctgatccgc
gccggcgccttcgactgcctgggcgttgaccgcgccgtgctgctggcctcggtcagcttc
gcgatggaatatgccgaccagcaggccaagtcggccaaccaggtcagcctgtttggcggc
gacgacagcgacctcgaaccgccgccggactacgtcaaggccacgcccttcaccgaccgc
cagcggctggctgaggaaaagatggcgctgggcttctacctgtccggccacatgttcgat
tcgttcgcgccggaagcgcggcgcttctcgcgcaccaagctggccgacctggagccgtcg
cgcgatccgcgtatgctgtgcggcgtcatcaccggcatccgtccgcagatgacccagcgc
ggcaagatcctgatcgtcacgctggacgacaagagcgcggtggtggaagtgaccgtgtat
gccgaggtgttcgaggaacacaagcatatgttcaaggaagatgaattcctggcggtgatc
ggcaaggtgtcggaggaccgcttcaacggcggcttgcggatttcggctgaaaaagtgttc
gacatcatctcgtcgcgcgtcaagcacggcaagcagctgagcatggcgttgccggtctcg
gtcgatgcgaagaaggtggcggaagtgctggcgccgtaccgccagaccgatggcttgccg
atttcggcgcgcattcagccgcagggcgtcagctgtgtgttgcagttgggggaagggtgg
cgcgtggcgccgtcggatgagttgcagctggcgttgcagcaggtgctgggcgcacgcgaa
gtcgcggtcgaatattga
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integrated database retrieval system
