Duganella dendranthematis: HH213_07915
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Entry
HH213_07915 CDS
T06560
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
dug
Duganella dendranthematis
Pathway
dug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HH213_07915 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dug03019
]
HH213_07915 (pcnB)
Enzymes [BR:
dug01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
HH213_07915 (pcnB)
Messenger RNA biogenesis [BR:
dug03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HH213_07915 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
DUF2204
Motif
Other DBs
NCBI-ProteinID:
QJD90026
LinkDB
All DBs
Position
1703940..1705385
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AA seq
481 aa
AA seq
DB search
MIKKLIRKILGTKSKAVRDTNTPVVLGPEAHGIDPRLLSNNAIRVTSSLQEAGYEAFVVG
GAVRDLLLGVKPKDFDIATNATPEQVKRLFRRAFIIGKRFQIVHVMFGQDLLEVTTFRGT
TSDSAPKDEHGRVLRDNTFGSQAEDAERRDFTINAMYYNPANQQVLDYHGGIEDIRAKTL
RIIGVPEARYREDPVRMLRVVRFAAKLKFSIEPETGAPIKVMAPLINNVPAARVFDEMLK
LLMSGHALACLQQLRKEGLHHGLLPLLDVVLEQPLGVKFVTLALDSTDSRIHAGKTVSPG
FLFASLLWHQVLEKWTAYRAAGEQTIPALHLAADDVLDSQTEKLALQRKIGTDMRDIWSM
QPRFERRTGKAPHKLLEHLRFRAGYDFLLLRCASGEIDAEIGDWWTAFYEGDEITREELI
ASARAPREGESGGGAGGGSTGGPAKRKRGPRRGGRNRSGRGEGGDGGEGGSDAPARDGGA
E
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgattaagaaactgatccgcaaaatcctcggcaccaagagtaaagcggtccgcgacacg
aacaccccggtggtgctggggcccgaagcccacggcatcgatccgcgcctgctgtccaac
aacgccatccgcgtcaccagcagcctgcaggaagccggctacgaagcctttgtggtcggc
ggcgccgtgcgcgacctgctgctgggcgtcaagccgaaagacttcgacatcgccaccaac
gccacgccggagcaggtcaagcggctgttccgccgcgccttcatcatcggcaagcgcttc
cagatcgtgcacgtgatgttcggccaggacctgctggaggtgaccaccttccgcggcacc
acctcggacagcgcgccgaaggatgaacatggccgcgtcctgcgcgacaacaccttcggc
tcgcaggcggaagacgcggaacgccgcgacttcaccatcaacgccatgtactacaacccg
gccaaccagcaggtgctggactaccacggcggcattgaagacatccgcgccaagacgctg
cgcatcatcggcgtaccggaagcgcgctaccgcgaagacccggtgcgcatgctgcgcgtg
gtgcgctttgccgccaagctgaaattcagcatcgagccggaaaccggcgcgccgatcaag
gtcatggcgccgctgatcaacaacgtgccggccgcgcgcgtgttcgacgaaatgctcaag
ctcttgatgagcggccacgcattggcctgtttgcagcagctgcgcaaggaaggcctgcat
cacggcctgctgccgctgctcgacgtggtgctggaacagccgctgggcgtcaagttcgtg
acgctggcgctggactcgaccgactcgcgcatccacgccggcaagaccgtctcgccgggc
ttcctgtttgcgtcgctgctgtggcaccaggtgctggaaaagtggaccgcctaccgcgca
gccggcgaacagaccattccggcgctgcacctggcggccgacgatgtactcgattcgcag
accgaaaagctggccttgcagcgcaagatcggcaccgacatgcgcgacatctggtcgatg
cagccgcgcttcgagcgccgcaccggcaaggcgccgcacaagctgctggaacacctgcgc
ttccgcgccggttacgacttcctgctgctgcgttgcgcctccggcgaaatcgacgccgaa
atcggcgactggtggactgcgttctacgaaggcgacgagatcacccgcgaagaactgatc
gcctccgcccgcgcaccgcgcgagggtgaaagcggcggcggcgctggtggcggcagtact
ggcggcccggccaaacgcaaacgcggcccgcgccgtggtggacgcaaccgcagcggccgt
ggtgagggcggcgacggcggcgaaggtggtagcgacgctcctgcgcgcgacggcggcgcc
gagtaa
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