Duganella dendranthematis: HH213_20845
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Entry
HH213_20845 CDS
T06560
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dug
Duganella dendranthematis
Pathway
dug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HH213_20845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dug03019
]
HH213_20845
Enzymes [BR:
dug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HH213_20845
Messenger RNA biogenesis [BR:
dug03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HH213_20845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UTP25
AAA_22
P-loop_SecA
DegT_DnrJ_EryC1
Sacchrp_dh_NADP
DTW
Motif
Other DBs
NCBI-ProteinID:
QJD92326
LinkDB
All DBs
Position
complement(4545882..4547282)
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AA seq
466 aa
AA seq
DB search
MSFSSLGLSDALMRAVADTGYTSPTPIQQQAIPAVLNGGDLLAGAQTGTGKTAGFTLPLL
HRLSTDAVGAKLTSNTSTRAIRALILTPTRELAAQVEESVRIYGKYTKLNSAVIFGGVGI
NPQIKQLKHGVDILVATPGRLLDHMDQGTVDLSKIEILVLDEADRMLDMGFIRDIRKVLA
KLPPKRQNLLFSATFSDEIKALANGLLTNPATIEVARRNSTVEIIAQKIHPVDRDKKHPM
LAHLIKSNNWTQVLVFTRTKHGANKLVEQLDKDGIKAMAIHGNKSQSARTKALSEFKDSK
LQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEND
MLKDIEKLIKQTLPREVIPGFEPDPTARAQPIQLRSGNPGHRNGGRQGQGGAARKPGAGN
GGGNGGGSKPRAAGGGNGGGAPRGNGGGNAGAPRSAAQHRSGGRGR
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgtcattttcctccctcggtttgtccgatgcgctgatgcgcgcagttgccgacactggc
tatacctcgccgaccccgatccagcagcaggcgattcccgccgtgctgaatggcggcgac
ctgctggccggcgcacaaaccggcaccggcaagactgccggctttaccctgccactgctg
caccgcttgtcgactgacgcggtcggcgccaaactgaccagcaacacctcgacccgcgcg
atccgcgcgctgatcctgaccccgacccgcgaactggcggcccaggttgaggaaagcgtg
cgcatctacggcaagtacaccaagttgaattccgccgtgatcttcggcggcgtcggcatc
aacccgcagatcaagcaactgaaacacggcgtcgacatcctggtggccaccccaggccgc
ctgctggaccacatggaccagggcacggtcgatctgtcgaagatcgaaatcctggtgctg
gacgaagccgaccgtatgctcgacatgggcttcatccgcgacatccgcaaagtgctggcc
aagctgccgccgaagcgtcagaacctgctgttctcggccactttctcggacgagatcaag
gcgctggccaacggcctgctgaccaacccggcgacgattgaagtcgcacgccgcaattcg
acggtggaaatcatcgcgcagaaaatccacccggtggaccgcgacaagaaacacccgatg
ctggcccacctgatcaagtccaacaactggacccaggtgctggtgttcacccgcaccaag
catggcgccaacaagctggtggaacagctggacaaagacggcatcaaagccatggcgatc
cacggcaacaagagccagtcggcgcgcaccaaggcgctgtcggagttcaaggacagcaag
ctgcaagtgctggtcgccaccgacatcgccgcgcgcggtatcgacattgaccagctgccg
cacgtggtcaactacgacctgccgaatgtgccggaagactacgtccaccggatcggccgt
accggccgcgccggcgcgacgggcgaagcggtatcgctggtctgcgtggatgagaacgac
atgttgaaagacatcgaaaagctgatcaagcagaccttgccgcgtgaagtgattccgggc
ttcgagccggacccgaccgcgcgtgcacagccgattcagctgcgcagcggcaacccaggc
catcgcaacggcggccgtcaaggtcaaggcggcgcagcgcgcaagccgggcgccggcaat
ggcggcggtaacggcggtggcagcaaaccgcgtgcggctggtggcggcaacggtggtggt
gctccgcgcggcaacggcggcggcaatgccggcgccccacgctccgcagcccagcaccgc
tccggcggccgcggccgctaa
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