Duganella dendranthematis: HH213_24590
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Entry
HH213_24590 CDS
T06560
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dug
Duganella dendranthematis
Pathway
dug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HH213_24590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dug03019
]
HH213_24590
Enzymes [BR:
dug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HH213_24590
Messenger RNA biogenesis [BR:
dug03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HH213_24590
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
QJD92990
UniProt:
A0ABX6MFF8
LinkDB
All DBs
Position
complement(5358519..5360039)
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AA seq
506 aa
AA seq
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MTFQSLGLIAPLLRTLDALGYKQPTPVQKQAIPAVLAGRDVMAAAQTGTGKTAGFALPIL
HRLTMEGATAPQCVRALVLVPTRELAEQVYESFRSYGSNLPLRSAVAYGGVAIEPQITKL
RKGLDVMVATPGRLLDLHDQGVISFELLQTLVLDEADRMLDLGFERDLDILLAALPKQRQ
TLLFSATFSDEIRKLAKGLLRDPVSIQVEAANTAVKSVKQWLVTTDKRRKPELFLHLLNK
LAWTQALVFVKTRKGAEALVKELLDHGLTADAIHGDKTQPARLRALDRFKRKEVQLLIAT
DVAARGLDIEALPLVVNFDLPSVAEDYIHRIGRTGRAGMEGEAVSLVCADEVDVLKAIET
LTRQAVPRFEEQGFEADHRVPETSAKGAAAPARKGPPPNAAKRPVGAPPLAKKPAPPKSE
ARPAGGSESLGFWTPPEKIGKLASRDRVPGSAPAGRSAPPRSKGADFGAPKGAVVVTGAR
GAKSQARSDGRATAKPGGRKGKPGPR
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgaccttccaatccctcggcctgatcgcccccttacttcgcacgctggacgcgctgggc
tacaagcagcctacgcccgtgcaaaagcaagccattcccgccgtgctggcaggccgtgac
gtgatggcggccgcgcagaccggtaccggcaagaccgctggtttcgcgctgccgatcctg
caccggctgacgatggaaggcgcgaccgcgccgcaatgcgtacgcgcgctggtgctggtg
ccgacgcgcgagctggcggaacaggtctacgaaagctttcgcagctatggcagcaacctg
ccgctgcgcagcgctgtagcctatggcggcgtggcgatcgagccgcagatcaccaagctg
cgcaagggtctggacgtgatggtggcaacgccaggccgtttgctcgacttgcacgaccag
ggcgtcatcagtttcgaactgctgcaaacgctggtgctggacgaggcggaccgcatgctg
gacctgggctttgagcgcgatctggatatcctgctggcggcgctgcccaagcagcgccag
accttgctgttctcggccaccttctcggatgagattcgcaagctggccaagggcctactg
cgcgatccggtgtcgattcaggtggaagcggccaacacggccgtcaaatcggtcaagcag
tggctggtcaccaccgacaagcgccgcaagccggagctgttcctgcatctgctgaacaag
ctggcttggacgcaggcgctggtgttcgtcaagacgcgcaaaggcgcggaagcgctggtc
aaggaattactggaccacggcctgacggcggacgccattcacggcgacaagacgcagccg
gcccgcctgcgcgcgctggaccgcttcaagcgcaaggaagtacagctgctgatcgccacc
gacgtggcggcgcgcggcctggatatcgaagcgctgccgctggtggtgaactttgacctg
ccgtccgtggcagaagactacattcaccgcattggccgcaccggccgcgcgggcatggag
ggcgaagcggtgtcgctggtgtgcgccgacgaggtggatgtgctgaaagcgatcgaaacg
ctgacgcgccaggccgtgccgcgtttcgaagaacagggttttgaagccgaccaccgtgtg
ccggagacgtcggcgaaaggtgctgccgcgccagcacgcaaagggccgccgccaaacgcc
gccaaacgccctgtcggcgcgccgccactggcaaaaaagccggcgcctccgaaaagtgag
gcacggcctgccggcggcagcgaatcgctgggcttctggacgccgccggaaaaaatcggc
aagttggccagccgcgatcgcgtgcccggtagcgcgccagcaggacgcagcgccccgccg
cgcagcaaaggcgcagacttcggtgcgccaaaaggcgcggtggtggtgaccggcgcgcgc
ggcgccaaatcgcaggcccgctccgacggccgtgccaccgccaagccgggcggccgcaaa
ggcaagccaggcccgcgttga
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