Duganella dendranthematis: HH213_24910
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Entry
HH213_24910 CDS
T06560
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dug
Duganella dendranthematis
Pathway
dug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HH213_24910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dug03019
]
HH213_24910
03400 DNA repair and recombination proteins [BR:
dug03400
]
HH213_24910
Enzymes [BR:
dug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HH213_24910
Messenger RNA biogenesis [BR:
dug03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HH213_24910
DNA repair and recombination proteins [BR:
dug03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HH213_24910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Cas3-like_C_2
AAA_30
SWI2_SNF2
AAA_22
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QJD93047
LinkDB
All DBs
Position
5432707..5434041
Genome browser
AA seq
444 aa
AA seq
DB search
MTTPLDKKIDRLLHKVFGMEALRDGQRRVIDSVLAGRDTLAVMPTGSGKSLCYQLPARLM
DGMTLVVSPLISLMKDQAERLEETGIASATQVNSSLSRADELEALESIEKAGKDVVFCTP
ERLATAEFQELLKQKKIALVVIDEAHCISQWGHDFRPAFMEIGAALEALGKPQVLALTAT
ATDDVIADIRSQLGRPRMRVVNTGIYRPNLQYRVRQVTNPEEKNQMLLDLVRETPGVGII
YAATVKAVNETYRLLLDAGESVTLYHGRLKAAERSENQNLFMNGERRVMVATNAFGMGID
KTDTRFVIHLQVPGNLEAYYQESGRAGRDGEDAECTLLYYHDDTRLQKFFLMKSKAPDEK
HELDREKLERMIGYAQSGFCRWKLLLDYFGDPVPGFEHCCRCDNCLAPPVISALGDNLEQ
QELGHLGLAEVIVRDQHQAGVAVG
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgactacaccactcgacaagaagatagaccggctgctgcacaaggtattcggtatggag
gcgctgcgcgatggccagcgccgcgtgatcgacagcgtgctggccggccgcgacacgctg
gccgtgatgcccaccggcagcggaaaatcgctgtgttaccagctaccggcgcggctgatg
gatggcatgacgctggtggtgtcgccgctgatctcgctgatgaaggaccaggccgagcgg
ctggaggagaccggcatcgccagcgccacgcaggtcaacagcagcctgtcccgcgccgac
gagctggaggcgctggagagcatcgaaaaggccggcaaggacgtggtgttctgcaccccc
gagcggctggccacggccgagttccaggaactgctgaagcagaagaaaatcgcgctggtc
gtcatcgacgaggcgcactgcatttcacaatggggccacgatttcaggccggcgttcatg
gaaatcggcgccgcgctggaagcgctgggcaagccgcaggtactggccctgaccgccacc
gccaccgatgacgtcatcgccgacatccgcagccagcttggccgaccgcgcatgcgcgtg
gtgaataccggaatttaccggcccaacctgcaatatcgcgtgcgccaggtgaccaatccg
gaggaaaagaaccagatgctgctggacctggtgcgcgagacgccgggcgtcggcatcatc
tacgccgccacggtcaaggcggtgaacgagacctaccggctgctgctggacgccggcgaa
agcgtcacgctctatcacggccgtctgaaagcggcggagcgtagcgagaaccagaacctg
ttcatgaacggcgagcggcgcgtgatggtggcgaccaacgccttcggcatgggcatcgac
aaaaccgacacccgcttcgtcatccatttgcaagtgccgggcaacctggaagcctattat
caggaatccggccgcgccggccgcgatggcgaggatgccgaatgcacgctgctgtactac
cacgacgatacgcggctacagaagttcttcctcatgaagagcaaggcgcccgacgagaag
catgagctggaccgcgaaaagctggaacgcatgatcggctacgcgcaaagcggcttttgc
cgctggaagcttctgctggattactttggcgatccggtgccgggcttcgagcactgctgc
cgctgcgacaactgcctggcgccgccggtcatttccgcgttaggggataacctcgaacag
caggaactgggtcacctgggtcttgctgaagttatcgtccgagatcagcaccaggctggc
gtggccgttggctag
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