Duncaniella sp. B8: FDZ78_00845
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Entry
FDZ78_00845 CDS
T05963
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
dun
Duncaniella sp. B8
Pathway
dun02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
dun00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
FDZ78_00845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dun03021
]
FDZ78_00845
Transcription machinery [BR:
dun03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FDZ78_00845
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_ECF
Sigma70_r4
HTH_11
HTH_24
HTH_23
HU-CCDC81_euk_2
PCI
UPF0122
HTH_30
GerE
HTH_AsnC-type
HTH_28
HU-CCDC81_bac_2
HTH_Tnp_4
Trp_repressor
DUF134
HTH_40
DUF8785
Motif
Other DBs
NCBI-ProteinID:
QCP71219
LinkDB
All DBs
Position
169811..170398
Genome browser
AA seq
195 aa
AA seq
DB search
MENEKFENEMLLVAALKIDSHEAFVKIFRHYYSDLVIFASHFIPDKETCEDIVQEAFVKI
WTNRKVLEIRTSLRTYLTSLVQHLALDEIKHRKVKTLYQDMNHEIIMSLPADEHVLYSEL
SDAIDNLLSQLQPDVLETYRLSRTHNLKYTEIAEKLNISVRTVESRVSKTIKFLQQNLKN
YKIIIYWILTFQHLL
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacgaaaaatttgaaaacgaaatgcttttagtggctgccttgaagatagacagc
catgaagcgtttgttaaaatttttcgacattattattcagaccttgtaatcttcgcatcc
catttcatcccggataaggagacatgcgaagatatagtccaggaagcatttgtgaaaatc
tggacgaaccgaaaagttcttgaaattcgaacatcactgaggacatatcttacatcctta
gtacagcatcttgctttagacgaaatcaagcaccgcaaggttaagaccctatatcaggat
atgaaccatgagattatcatgtccctgccagctgatgaacatgtcctgtattcggaattg
agtgacgctattgataatctgctctcacagctccaaccggatgttcttgaaacatatagg
ttgtcaagaacacataatctgaaatataccgaaatcgccgagaaactcaatatctcggtc
aggactgtggaatctcgcgtcagcaaaacgataaaattccttcaacagaatctcaaaaat
tataagatcatcatatattggattctaacgtttcaacaccttttataa
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