Duncaniella sp. B8: FDZ78_05200
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Entry
FDZ78_05200 CDS
T05963
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dun
Duncaniella sp. B8
Pathway
dun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FDZ78_05200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dun03019
]
FDZ78_05200
03009 Ribosome biogenesis [BR:
dun03009
]
FDZ78_05200
Enzymes [BR:
dun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FDZ78_05200
Messenger RNA biogenesis [BR:
dun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FDZ78_05200
Ribosome biogenesis [BR:
dun03009
]
Prokaryotic type
rRNA helicases
FDZ78_05200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CFAP90
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QCP72010
UniProt:
A0AAE6BYN5
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All DBs
Position
1159395..1161125
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AA seq
576 aa
AA seq
DB search
MTTFEELGVSQPLRKAVEELGFEYPMPVQERVIPRLLGDANDIIALAQTGTGKTAAFGLP
LLQRIDPADHTPQALILAPTRELCLQIGSDLADFSKYIPDVKVLPVYGGSSIESQIRGLK
KGVQIIVATPGRLIDLIKRGVVRLDGVHTVVLDEADEMLNMGFLDSIEEILSYIPADRKM
LLFSATMPPDILKIAKRYMKDYEELVVGTRNEGAENVRHIYYMVNARDKYLALKRVVDNS
PNIYAIVFCRTRRDTQEIADNLIRDGYNAEALHGDLSQQQRDIVMKKFRDRVVSILVATD
VAARGLDVDNLTHVINYGLPDDTAVYTHRSGRTGRAGKSGVSIAIIHSREKGKMREIERI
IGKTFEHKDVPTPEHIIEKQLYNLADRIERVKVNETEIAPYLSGISRKLEWLSEEDLLKR
VISLEFNRLLDYYKDAPKIDFIDAKPSRSERKARKAAAEREHERPKNDREKDRRTAERGF
ERVYVNIGKRDGFFAGNLIEMLNRLINGKRVDVGRIDLLPGYTLFDVKKSDARKVVGALT
GAEFYGKRLHSEIADPERDYSRIAEKRKNKAKKTAS
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgacaacatttgaagaactcggcgtcagccagccgctgcgcaaagccgttgaagagctc
ggattcgaatatcctatgcccgttcaggaacgcgtgatcccgcgcctgctcggcgacgcc
aatgacataatcgccctcgcccagaccggcaccggcaaaaccgcagccttcggactgcct
ctgctgcagcgcatcgaccccgccgaccacactccccaggccctcatcctcgcccccacc
cgcgagctttgcctccagataggcagcgacctggccgacttctcgaaatacatccccgat
gtcaaagtgctcccggtctacggcggctcaagcatcgaaagccagatccgcggactcaaa
aaaggggtccagatcatagtcgccaccccaggccgtctgatcgacctcataaagcgcgga
gtggtccgcctcgacggagtacacaccgtagtgctcgatgaagccgacgagatgctcaac
atgggcttcctcgacagcatcgaagaaatcctctcctacatccccgccgaccgcaagatg
ctgctcttctccgccacaatgccgcctgacatcctcaagattgccaagcgctacatgaaa
gactacgaggaactcgtggtcggaacccgcaacgaaggagcagaaaacgtgcgccacatc
tactacatggtcaacgcccgcgacaaatatctggccctcaagcgcgtggtcgacaactcg
cccaacatctacgccatagtcttctgccgcacccgccgcgacacccaggagatagccgac
aacctcatccgcgacggctacaacgccgaagccctccacggcgacctctcccagcagcag
cgcgacatagtgatgaagaaattccgcgaccgcgtggtctccatactcgtggccaccgac
gtggcggcccgcggactcgacgtcgacaacctcacccacgtcatcaactacggcctaccc
gacgacaccgccgtctacacccaccgctcaggccgcacaggccgagccggcaagtcaggc
gtctcgatagccatcatccactcgcgcgaaaaaggcaaaatgcgcgagatagagcgcatc
ataggcaagaccttcgaacacaaagacgtgcccactcccgaacacatcatcgaaaagcag
ctctacaacctcgccgaccgcatagagcgcgtcaaagtcaacgaaaccgagatagcaccc
tacctctcaggcatctcgcgcaaactcgaatggctctccgaggaagacctgctcaagcgc
gtcatctcgctcgaattcaaccgcctgctcgactactacaaagacgcaccgaaaatcgac
ttcatcgacgccaagccctctcgctcggagcgcaaggcccgcaaggctgccgccgagcgt
gagcacgaacgccccaaaaacgaccgcgagaaagaccgccgaacagccgaacgcggcttc
gagagagtctatgtcaacataggcaagcgcgacggcttcttcgccggaaacctcatcgaa
atgctcaacagactcatcaacggcaagcgcgtcgacgtgggccgcatcgaccttctgcca
ggctacaccctcttcgatgtcaaaaaatccgatgcccgcaaggtggtcggagcgctcacc
ggagccgaattctacggaaagcgcctccacagcgagatagccgatcccgaacgcgactac
agccgcatagccgaaaaacgcaagaacaaagccaaaaagaccgccagctga
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