Duncaniella sp. B8: FDZ78_05395
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Entry
FDZ78_05395 CDS
T05963
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dun
Duncaniella sp. B8
Pathway
dun03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dun00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FDZ78_05395 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dun03021
]
FDZ78_05395 (rpoC)
03400 DNA repair and recombination proteins [BR:
dun03400
]
FDZ78_05395 (rpoC)
Enzymes [BR:
dun01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FDZ78_05395 (rpoC)
Transcription machinery [BR:
dun03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FDZ78_05395 (rpoC)
DNA repair and recombination proteins [BR:
dun03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FDZ78_05395 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
QCP72046
LinkDB
All DBs
Position
complement(1216942..1221264)
Genome browser
AA seq
1440 aa
AA seq
DB search
MAFRKDNKQKNSFSKISIGLASPEEILEKSSGEVLKPETINYRTYKPERDGLFCERIFGP
VKDFECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIKLVVPVAHIWYFRSLPNKI
GYLLGLPSKKLDAVIYYERYVVINPGVAAEGEKPIQRLDLLSEEEYFEIIDRLPRENQLL
DDTDPNKFVAKMGAEAIYDLLKDINLDDLSYALRDQANSEGSQQRKTEALKRLQVVESFR
ASRERNRPEWMILQAVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APDVILRNEKRMLQEAVDSLLDNSRKSSAVKTEANRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPELKMHECGIPKNMAAELYKPFVIRKLIERGIVKTVKSAKKIVDRKEP
VVWDILEYVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLACTAFNADFDGDQM
AVHLPLGNEAILEAQLLMLGSHNILNPANGAPITVPSQDMVLGLYYITKLRKGDKGEGLK
FYGPEEAEIAYNEGRVTLHAPVSVVVEDIDEFGNPIKHLVENTSVGRVLVNRYVPKEIGY
VNEILSKKSLRTIISRVIKHCGIPRSAQFLDDIKNLGYYMAFKGGLSFNLGDVLIPAEKE
EYVREGYEQVQEVLNNYSMGFITNNERYNQIIDIWTHVNSRLADTLMKQISADKQGFNPV
YMMLDSGARGSKDQIRQLSGMRGLMAKPQKSGAEGGQIIENPILANFKEGLSVLEYFIST
HGARKGLADTALKTADAGYLTRRLVDVAHDVIINEEDCGTLRGLVCTEIKNNDEVVASLG
ERILGRVSVHDIIDPTNGELIVAAGEEINDLAADRINESPIESVEIRSVLTCESKKGVCA
KCYGRNLATHRMVQMGEAVGVIAAQSIGEPGTQLTLRTFHVGGVASNIAAVNSLTSRYEG
ILEIDELRTVQTEEVDASGRKVDVVIGRLAEMRIIDPTTKMMLTNANIPYGAKLFFDNGA
RVKKGDVICEWDPFNAVIVSEAGGKVQYVNLTENVTYRVDSDEQTGLREKIIIESKERGK
VPEANIVDANGQILRTYALPVGAHLMVDENAELKPGEIFVKIPRAAGSAGDITGGLPRVT
ELFEARNPSNPAIVSEIDGEVKFGKVKRGNREISVTSKLGETKKYLVPLSKQILVQENDY
VRAGTPLSDGATTPADILNIMGPTAVQEYIVNEVQDVYRMQGVKINDKHFEVIVRQMMRK
VNILDPGDTNFLEQQVVDKRDFMDENDRIWGKKVVTDAGDSENVKPGQIITARKLRDENS
SLKRRDLRPIQVRDAQPATSEQILQGITRAALQTSSFMSAASFQETTKVLNEAAINGKVD
YLVGMKENVICGHLIPAGTGLRSYERIVVGGKDDIEDAFDIPVVTRDEAPEAVDVAHTEL
NT seq
4323 nt
NT seq
+upstream
nt +downstream
nt
atggcttttagaaaagacaataagcaaaaaaacagtttctcaaaaatctccatcgggctc
gcatcgcctgaggagattcttgagaagtcgagcggcgaggtgttaaaacctgaaacaatc
aactaccgcacctacaagcctgagcgcgacggcctcttctgcgagcgcattttcggtccc
gtcaaggacttcgaatgccattgcggcaagtacaagcgcatccgctacaaaggcattgtc
tgcgaccgatgcggtgttgaagtgaccgaaaagaaagtacgtcgtgagcgcatgggccac
atcaaacttgtggttcccgtggcccacatctggtatttccgctcactccccaataagatc
ggctacctcctgggccttccctcgaagaaactcgatgcagtcatctactacgaacgctac
gtggtcatcaaccccggcgttgcagccgaaggagagaaacccatacagcgtctcgacctc
ctctccgaggaagaatacttcgagatcatagaccgtctgccccgcgaaaaccagctcctt
gacgacaccgaccccaacaagttcgttgccaaaatgggtgccgaggcaatctacgatctt
ctcaaagacatcaacctcgacgacctctcctacgccctgcgcgaccaggccaactccgaa
ggatcgcagcagcgcaagaccgaagccctcaagcgcctccaggtggttgaatcgttccgc
gcatcgcgtgaacgcaaccgtcccgaatggatgatcctccaggcagtacccgtcattccg
cctgaactccgtccgctcgtgcctctggacggcggccgcttcgcaacttccgacctcaac
gacctctatcgtcgcgtcatcatccgcaacaaccgtctgaaacgcctcatagagatcaaa
gcccctgacgtcatcctccgcaacgaaaagcgtatgctccaggaagccgtcgactcactg
cttgacaactcacgcaaatcctcagccgtaaagaccgaagccaaccgtcccctcaaatcg
ctctccgactcgctcaagggcaagcagggccgcttccgtcagaacctcctcggtaagcgt
gtcgactactcggcccgttcggttatcgtcgtaggtcccgaactgaagatgcacgagtgc
ggtatccccaaaaacatggctgccgaactctacaagcccttcgtcatccgcaagctcatc
gagcgcggcatcgtcaagaccgtcaagtctgccaagaagatcgtcgaccgcaaggaacca
gtcgtctgggacatccttgaatacgtaatgaagggccaccccgtgctcctcaaccgagcc
ccgaccctccaccgtctcggcatccaggccttccagcccaaaatgatcgaaggaaaggca
atccagctccaccccctcgcatgtacggcattcaacgccgacttcgacggtgaccagatg
gcagtccaccttcctttgggcaacgaagccatcctcgaagcccagctccttatgctcgga
tctcacaacatcctcaaccccgccaacggcgcacctatcaccgtgccctcgcaggacatg
gtgctcggtctctactacatcaccaagctccgcaaaggcgacaagggcgaaggcctcaaa
ttctacggacccgaagaagctgaaatcgcctacaacgaaggccgcgtgacactccacgca
cccgtgtcggttgtagtcgaagacatcgacgaattcggcaaccccatcaagcacctcgtc
gagaatacctccgtaggccgtgtgctcgtcaatcgctacgtgcccaaagaaatcggctac
gtcaatgagatcctctccaagaaatcactgcgtaccatcatctcgcgcgtaatcaaacac
tgcggtattccccgctcggcacagttccttgacgacatcaagaacctcggttactacatg
gcattcaagggcggtctgtcattcaacctcggcgacgtactcatccctgccgaaaaagaa
gaatatgtgcgcgagggctacgaacaggtgcaggaagtcctcaacaactactcgatgggc
ttcatcaccaacaacgaacgctacaaccagatcatcgacatctggacacacgtcaactca
cgtctggccgacaccctcatgaaacagatctcggccgacaagcagggcttcaaccctgtc
tacatgatgctcgactccggcgcccgtggttctaaagaccagatccgtcagctctccggc
atgcgtggccttatggccaagccccagaagagcggtgccgaaggaggccagatcatcgaa
aacccgattcttgcaaacttcaaggaaggcctttcggtgctcgaatacttcatctcgacc
cacggtgcccgtaagggtcttgccgacaccgcgctcaagacagccgacgccggttatctt
acccgccgtctggtcgacgtggcccatgacgtcatcatcaacgaagaagactgcggaacc
ctccgcggactcgtctgcaccgagatcaagaacaacgacgaagtcgtcgcttcactcggc
gaacgcatcctcggacgcgtctctgtccatgacattatcgaccccaccaacggcgaactc
atcgtcgccgcaggagaagagatcaacgaccttgcagccgaccgcatcaacgaatcaccc
atcgaatcagtcgagatccgctcggtgctcacctgcgaatcaaagaagggtgtctgcgcc
aagtgctacggccgcaacctcgccacacaccgcatggtccagatgggcgaagctgtcggc
gtgatcgccgcacagtcaatcggcgagcccggtacacagctcaccctccgtacattccac
gtcggtggtgtcgcctcgaacatcgccgctgtcaactcgctcacctcgcgctacgaaggc
atccttgaaatcgacgaactccgcaccgtgcagaccgaagaggtcgacgccagcggacgt
aaggtcgatgtggttatcggccgactcgcagaaatgcgcatcatcgaccccaccacaaag
atgatgctcaccaacgcaaacatcccctacggcgcgaaactcttcttcgataacggcgca
cgtgtcaagaaaggcgatgtgatctgcgaatgggaccccttcaacgccgtcattgtcagc
gaagcaggtggtaaggtacaatacgtcaacctcaccgaaaacgtcacctatcgcgtcgac
tccgacgagcagaccggtctccgcgaaaaaatcatcatcgaatccaaggaacgcggcaaa
gtgcctgaagccaacatcgttgacgcaaacggccagatcctccgcacctatgcactcccc
gtgggcgcccacctcatggtcgacgaaaacgccgaactcaaacccggcgaaatcttcgtc
aagatcccgcgcgccgcaggctctgcaggtgacatcaccggtggtctcccccgcgtgacc
gaactcttcgaagcccgtaacccctccaaccccgccatcgtatctgaaatcgacggtgaa
gtcaagttcggaaaggtcaaacgaggcaaccgcgagatttccgtcacctccaaactcgga
gagaccaagaaatatctcgtgcccctgtcaaaacagatcctcgttcaggaaaacgactat
gtgcgcgcaggcaccccgctctcagacggcgccaccacaccggccgacatcctcaacatc
atgggtccgacagccgttcaggaatacatcgtcaatgaagtccaggacgtctaccgtatg
cagggtgtgaagatcaacgacaagcacttcgaagtcatcgtacgccagatgatgcgcaaa
gtcaacatcctcgatcccggcgacaccaacttcctcgaacagcaggtggtcgacaagcgc
gacttcatggacgaaaacgaccgcatctggggcaagaaagttgtcaccgacgccggcgac
agcgaaaacgtcaagcccggccagatcatcaccgcacgcaagctccgcgacgaaaactca
tcgctcaagcgccgtgacctccgtcccatccaggtacgcgatgcacagcccgccacctcc
gaacagatcctccagggtatcacccgtgccgccctgcagacatcatcgttcatgtcggcc
gcatcattccaggaaaccaccaaggtgctcaacgaagccgctatcaacggcaaggtcgac
tacctcgtgggcatgaaggaaaacgtgatctgcggacacctcattcccgcaggtaccggt
ctccgctcctacgaacgcatcgtggtaggtggcaaggatgacatcgaagacgcctttgat
atccccgtagtcacccgcgacgaagcccccgaagcagtcgacgtagcccacaccgaactc
tga
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integrated database retrieval system
