Duncaniella sp. B8: FDZ78_05910
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Entry
FDZ78_05910 CDS
T05963
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
dun
Duncaniella sp. B8
Pathway
dun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FDZ78_05910 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dun03019
]
FDZ78_05910 (rny)
Messenger RNA biogenesis [BR:
dun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FDZ78_05910 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
Neur_chan_memb
KH_2
PFF1_TM
Cas3_HD
DUF4686
Motif
Other DBs
NCBI-ProteinID:
QCP72138
UniProt:
A0AAE6BVQ1
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Position
1339778..1341319
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AA seq
513 aa
AA seq
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MDILFYICAALIGAAIGIVIMVAVQRSTARSRAKTIIDDANREAEVIMKDKLLEAREQEL
RIKTEAEKQANQRLQRIQSEESKLKQRQTQLNQQQSENARARNENEQTRQNLEAQLAVVD
QRKEELDRLRRTAQDTLEHISGLSSEEAKEKLIESLKDEAKTAASAYINDIMDEAKMTAN
KEAKRIVVQSIQRLATETAIENSVTVFHIDSDEIKGRIIGREGRNIRALEAATGIEIIVD
DTPEAIVLSGFDPVRREIARLALHQLVADGRIHPARIEEVVAKVRKQIEEEIIETGKRTA
IDLGIHGLHPDLIRMVGKMKYRSSYGQNLLQHSRETANLCAIMAAELGLNPKKARRAGLL
HDIGKVPDEEPELPHALLGMKLAEKYKEKPEICNAIGAHHDEIEQTSLLAPIVQVCDAIS
GARPGARREIVEAYIKRLNDLEQLALSYPGVIKTYAIQAGRELRVIVGADKIDDVETEKL
SSEIARRIQDEMTYPGQVKITVIRETRSVSFAK
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atggatatattattctacatctgcgccgccctcataggggccgccatcggaatagtgatc
atggtagccgtccagcgatcaaccgcccgctcgcgcgccaaaacgataatcgacgatgcc
aaccgcgaggcagaagtgatcatgaaagacaaacttctcgaagcccgcgaacaggaactc
cgcatcaagaccgaagccgaaaagcaagcaaatcagcgcttgcagcgcatccagagcgaa
gagtcgaaactcaaacagcgccagactcagctcaaccagcagcagagcgaaaacgcccgc
gccagaaacgaaaacgagcagacccgccagaatctcgaagcccagctcgccgtggtcgac
cagcgcaaggaagaactcgaccgcctgcgccgcaccgcccaggacaccctcgaacacatc
tcaggactctcaagcgaagaagccaaggaaaagctcatcgaatcgctcaaggacgaagcc
aagacagccgcaagcgcctacatcaacgacatcatggacgaagccaagatgacggccaac
aaggaagcaaagcgcatcgtggtccagtcaatccagcgcctcgccacagagaccgccatt
gaaaactccgtgacagtcttccacatcgacagcgacgagatcaaaggccgcatcataggc
cgcgaaggccgcaacatccgcgccctcgaagccgcgacagggatcgaaatcatcgtcgat
gacacccctgaagccatagtgctctcaggcttcgaccccgtgcgacgcgagatagcacgc
ctcgccctccatcagctcgtggccgacggccgcatccaccccgcccgcatcgaggaagtt
gtggccaaagtgcgcaaacagatcgaggaagagatcatcgaaaccggcaagcgcacagcc
attgacctcggcatccacggcctccaccccgacctcatccgcatggtcggaaaaatgaaa
taccgctcaagctacggacagaacctcctgcagcactcgcgcgagaccgcaaacctctgc
gccatcatggccgccgagctcggactcaaccccaagaaagcccgtcgcgcaggcctgctc
cacgacataggcaaagtgcccgacgaagagcccgaactgccccacgcactcctcggcatg
aaactcgccgagaaatacaaggaaaaacctgagatctgcaacgccatcggcgcccaccac
gacgaaatcgaacagacctcgctcctggcccccatcgtccaggtctgcgacgcaatctca
ggcgcacgtcccggcgcccgccgcgagattgtcgaagcctatatcaagcgtctcaacgac
ctcgaacagctcgccctcagctatcccggcgtgatcaagacctacgccatccaggccggc
cgcgaactgcgcgtgattgtcggagccgacaagatcgacgacgtcgagaccgaaaagctc
tcatcggaaatcgcccgccgcatccaggacgaaatgacatatcccggacaggtcaaaatc
accgtaatccgcgagacccgctccgtaagcttcgccaagtaa
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