Duncaniella sp. B8: FDZ78_07615
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Entry
FDZ78_07615 CDS
T05963
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
dun
Duncaniella sp. B8
Pathway
dun03410
Base excision repair
dun03430
Mismatch repair
dun03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FDZ78_07615 (recJ)
03430 Mismatch repair
FDZ78_07615 (recJ)
03440 Homologous recombination
FDZ78_07615 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dun03400
]
FDZ78_07615 (recJ)
DNA repair and recombination proteins [BR:
dun03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
FDZ78_07615 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
FDZ78_07615 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FDZ78_07615 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Syntaxin-5_N
Motif
Other DBs
NCBI-ProteinID:
QCP72446
LinkDB
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Position
complement(1762519..1764240)
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AA seq
573 aa
AA seq
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MTSKWNYCPLTSDEQQVESDLAKSYAGVPPVSELLVQRGISSVREAEKFFHPSLKDLHDP
FLMPDMDKAVHRLNRAMGAKEQIMVYGDYDVDGTTAVALVYKYLRNFYSHIDYYIPTRNE
DGYGISKATIDMAARQGVKLFIILDCGIKATEEIEYARSLGIDFIICDHHVPDEKLPPAV
AILNPKLDGSTYPCPHLSGCGVGYKLMQAFAISNGLGNTELEGLLDLVAVSIAADIVPMV
GENRILTYHGLKRLNSNPNMGLRAIIRICGLGNREITISDVIFKIGPRINASGRMQSGKE
AVDLLVARDVADAYTRAKEIDRYNQDRKELDKQITEEANTILEERGEMTSDQKSIVIYNK
NWHKGIIGIVASRLTELYYKPSVVLTYSNGLATGSSRSVQGFDVYKAVESVRDLLENFGG
HTYAVGLSLKEENIAEFTRRFEQFVSDNIRPDQLTPQLDIDAYLTFAEITPEFLSLLKQF
NPFGPGNSKPVFCTRGVTDFGTSKLVGRHSEHIKLELVDSTCGKVMNGIVFNSAASFDHI
HSGKPFSICYTIEENKHKGGSAIQLFVKEIHPE
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgacaagtaaatggaattactgtccccttacatccgacgaacaacaagtggagtccgac
ctggccaaaagctatgccggagtgccgcccgttagcgagctgcttgtgcaacggggcatt
tcctcggtcagagaggcggagaaatttttccacccctcgctgaaggatctgcatgacccg
tttctcatgcccgacatggacaaggccgtccaccggctaaaccgtgctatgggggctaag
gagcagattatggtctacggtgactatgatgtagacggaaccacagcagtggccctcgtc
tacaaatatctccgtaacttctactcccatatcgactactatatcccgacgcgcaacgaa
gacggatatggcatctcgaaagccaccatcgacatggccgcccgtcaaggggtcaaactt
tttatcatcctcgattgcggaatcaaagcaaccgaagagatcgagtatgcccgttctctg
ggcatagactttattatctgcgaccatcatgtgcccgacgagaaactcccgccggcggtt
gccatcctcaacccgaaactggatgggagcacctatccatgtccccacctctcaggctgc
ggcgtgggctataagctcatgcaggctttcgccatatcaaacggactgggcaacaccgaa
ctggaagggcttctcgacctcgtggctgtgtcaatcgccgcagacatcgtaccgatggta
ggcgaaaaccgcatcctcacataccacggactcaaaaggctcaactccaaccccaacatg
gggctgagagccataatccgtatctgcggcctcggaaaccgagaaatcacaatcagcgac
gtcatcttcaagatcggcccgcgcatcaacgcctccggacgcatgcagagcggaaaggaa
gccgttgacctgctcgtggcccgcgatgtggccgatgcctacacccgcgcaaaggagata
gaccgctacaaccaggaccgcaaggaactcgacaaacagataaccgaggaagccaatacg
attctcgaagagcgcggagagatgacctcagaccagaagtcgatagtaatctacaacaaa
aactggcacaagggcatcatcggcatcgtagcctcgcgactgaccgagctctactacaag
ccatcggtggtcctcacctactccaacggactggccacaggctcatcgcgctcggtgcag
ggcttcgacgtctacaaagccgtggaatcagtgcgcgacctgcttgagaacttcggcggc
cacacctacgccgtaggcctctcgctcaaggaagagaacatagcggagttcacacgccgt
ttcgagcagtttgtcagcgacaacatacgccccgaccagctaaccccccagctcgatatc
gacgcctacctgacattcgccgagatcacccccgaattcctatccctgctcaaacagttc
aaccccttcggtccgggcaacagcaaaccggtgttctgtacacgcggagtgactgacttc
ggcacctcgaaactcgtagggcgccacagcgagcacataaaactcgaactcgttgacagc
acctgcggaaaagtcatgaacggcatagtcttcaacagcgccgccagcttcgaccacatc
cattcgggcaaacccttcagcatctgctacaccatcgaggaaaacaaacacaagggaggt
tccgccatacagctcttcgtcaaggaaatccatcccgaatag
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