Duncaniella sp. B8: FDZ78_10765
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Entry
FDZ78_10765 CDS
T05963
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dun
Duncaniella sp. B8
Pathway
dun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FDZ78_10765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dun03019
]
FDZ78_10765
Enzymes [BR:
dun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FDZ78_10765
Messenger RNA biogenesis [BR:
dun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FDZ78_10765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
DUF6771
Cas3-like_C_2
AAA_30
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QCP72994
UniProt:
A0AAE6BWZ4
LinkDB
All DBs
Position
complement(2542912..2544297)
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AA seq
461 aa
AA seq
DB search
MKFDELDLSYDILDALDAMRFDECTPIQEQAIPVILEGRDLIAVAQTGTGKTAAYLLPVI
DRLADMPEAKDYVNCIVMSPTRELAQQIDRQMEGFAYYVPVNSVAIYGGTDGAGFAQQQR
GLKMGADVVIATPGRLLAHLQMGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKHLPKD
RQTLMFSATMPPKIQQLAKAILNDPAEVKIAVSRPTEKIDQSAFVCHEGQKTGILKHLFR
TAHSQRVIIFSSSKIKVKELARELRRCKVKTGEMHSDLDQNVREEVLLDFRAGKIDVLVA
TDIVARGIDIDDIAMVVNYDVPREAEDYVHRIGRTARANADGKAVTLVSAKEQSKFGQIE
NFLGYEVRKETVPAELGEAPEYTPSRRQSSRGDRRNRKPSRSGGKGRKGNNSNNDKSNNN
SISNSNKRNSRKNHQNHSRKKTSGGANGSNSSKNSSTPAQS
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgacgagcttgatctgagctacgatatacttgacgcactcgatgcaatgcgt
ttcgacgagtgcaccccaatccaggaacaggctatccccgtgatccttgaaggccgcgac
ctaatagccgtagcccagaccggcaccggaaaaaccgccgcctatctgctccccgtcatc
gaccgcctggccgacatgcccgaagcaaaagactatgtaaactgcatcgtgatgtcgccc
acccgcgaactcgcccagcagatcgatcgccagatggaaggcttcgcctactacgtccct
gtcaacagcgtggccatctacggcggaaccgacggagccggatttgcccagcagcaacgc
gggctaaaaatgggagccgatgtggtgatagcgactcccggacgcctcctcgcccacctg
cagatgggctatgtagatctctcgcgcgtctcctatttcatcctcgacgaagccgaccgc
atgctcgacatggggttttatgatgatatcatgcagattgtcaagcatctgccaaaagat
cgccagaccctgatgttttccgcaacaatgccaccgaaaatccagcagctggccaaagcc
atactcaacgatccggccgaagtcaagatagctgtctcccgcccgaccgaaaaaatagac
cagtcggcattcgtctgccatgaaggccagaagacaggcatactcaagcacctcttccgc
acagcccactctcagcgagtcatcatattctcatcctcgaaaatcaaagtcaaggaactc
gcccgcgaactgcgccgctgcaaggtaaaaaccggagagatgcactcggatctcgatcag
aatgtccgcgaagaagtgctgcttgacttcagagccggcaaaatcgatgtgcttgtagcc
actgacatcgtagcgcgaggcatcgacatcgacgacatcgcaatggtggtcaactacgac
gtgccccgcgaagccgaagactacgtccaccgtatcggccgtaccgcccgcgccaatgcc
gacggaaaagccgtcacccttgtctctgccaaagagcagtcgaaattcggccagatagaa
aatttccttggctatgaagtgcgcaaggaaacagtgccagccgaacttggcgaagcaccg
gaatacaccccctcacgccgtcagagcagccgtggagaccgccgcaaccgcaaaccatcc
cgctcagggggcaaagggcgcaaaggcaataacagcaacaacgacaagagtaataataac
agcattagcaacagcaacaaacgcaactcccgcaagaaccatcagaaccacagccggaag
aaaacttcgggaggcgcaaacggatcaaacagttccaaaaacagctccacgccggcccaa
agctga
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