Duncaniella sp. B8: FDZ78_11280
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Entry
FDZ78_11280 CDS
T05963
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
dun
Duncaniella sp. B8
Pathway
dun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FDZ78_11280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dun03021
]
FDZ78_11280
03019 Messenger RNA biogenesis [BR:
dun03019
]
FDZ78_11280
Transcription machinery [BR:
dun03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FDZ78_11280
Messenger RNA biogenesis [BR:
dun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FDZ78_11280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
NACHT
AAA_25
Spore_III_AA
Mor
AAA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QCP73084
UniProt:
A0AAE6BX40
LinkDB
All DBs
Position
complement(2669148..2671325)
Genome browser
AA seq
725 aa
AA seq
DB search
MYNYSELEAMDDSQLREVAQTNGIKKINLDDKENLVYEILDKQARDVAASSTANTPQKNR
RGKKESKDVKDENQQKQTRKKKEEPAPETSEQDAPQATEQPQQQKKRGRKPRAAAAADSQ
MESAPAAETAVEAAEPTPPATDNTPATIAEGQQTQGEQQPKRRRGRPPRNPQPEQDNTPA
TVDSENSAPHENNAEVSSPKEENKTEGSNAETAGITGPMPKQLPAPAFSNQESAQDERPR
HGVFIRPGQTNEQTAISNVDNQQPQPKRDFRPKDSSFGSFFPRSGGRTFAPRSQQEKEQQ
PVQPQQPQPQMPQAPIVLGEPGMEKQQPQSKKNKKNHNKNQQFEQRQQQQAYNFDGIIET
TGVLEIMPEGHGFLRSSDYNYLASPDDVLVTKEQIKQYALRSGDVVDATLRAPREGDKYF
PLSSVKSVNGRSVEYIRDRVAFEHLTPLFPNEKFDLTSGRSSNISTRVVDMFSPIGKGQR
GLIVAPPKTGKTILLKDIANAIAENHPETYIMILLIDERPEEVTDMSRSVNAEVIASTFD
EPAERHVKIASIVLEKAKRMVECGHDVVILLDSITRLARAYNTCAPASGKILSGGVDANA
LQKPKRFFGAARNIENGGSLTIIATALTETSSKMDEVIFEEFKGTGNMELQLDRKLSNKR
IFPAVDIMASSTRRDDLLLRNETLNRMWILRRFLSDRNSIEAMEFIKDRMERTSDNDELL
RTMGD
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgtataattactccgaactcgaagccatggacgactcgcaactgcgggaagtcgcacaa
accaacggcataaagaaaatcaaccttgacgataaagaaaatctcgtctacgagattctt
gacaagcaggcgcgtgatgtcgcagccagctcgaccgctaacacccctcaaaaaaaccgt
cgcggcaaaaaagaatccaaagacgtaaaagacgagaatcagcagaaacagacacgaaaa
aagaaagaagaaccggcaccggaaacctctgaacaagacgcgcctcaggccaccgaacag
cctcagcagcagaagaaacgtggccgcaaaccgcgtgcggcagcagccgctgacagccag
atggaatccgcacctgccgctgaaacagctgttgaagctgctgaaccgacacctccggcc
acagacaacaccccagcaacaattgccgaaggccaacagacacaaggcgaacaacagcca
aaacgtcgtcgcggtcgcccgccgcgcaatccgcagcctgaacaggacaacaccccagca
accgttgattcagaaaactccgcaccgcatgaaaacaacgctgaggtttcatccccaaaa
gaagaaaacaaaaccgaaggaagcaatgctgaaaccgcaggcatcactgggcccatgccc
aaacagctgccggcaccggctttttcaaaccaggaatctgcccaggatgaacgcccacgc
cacggcgtatttatccgcccaggccaaaccaacgaacagaccgccatttccaacgtcgac
aaccagcagccacagcctaaacgcgattttcgccctaaagacagttctttcggctctttc
tttccccgttctggcggacgcacgttcgcaccccgttcgcagcaggaaaaagaacagcag
cctgttcagccgcagcagccacagccccagatgccacaggctcctatagtcctcggcgaa
ccgggcatggaaaaacagcagccccaaagcaaaaagaacaaaaagaaccacaacaaaaac
cagcagttcgaacagcgccagcaacaacaggcctataactttgacggaataatcgaaaca
accggagtgcttgaaatcatgcccgaaggacacgggtttctccgatcaagcgattataat
taccttgcttctcctgacgatgtactcgtcactaaagaacagatcaaacaatatgccctt
cgctcaggcgatgttgtcgatgccacgttacgagccccgcgcgaaggcgacaaatacttc
ccgctcagctctgtgaaaagcgtcaacggacgttctgtcgaatacatccgcgaccgcgtg
gcattcgagcacctcaccccgcttttccctaacgaaaaattcgacctgacctcaggccgt
tcaagcaacatttccacacgtgtggtcgacatgttctcccccattggaaaaggacagcga
ggtctgatagtagcacctccgaagacaggtaagaccatacttctgaaagacatcgccaac
gcaattgccgagaatcaccccgaaacctacatcatgattctccttattgacgaacgcccg
gaagaagtaaccgacatgagccgcagcgtcaatgcggaagtaatcgcatctacattcgat
gaaccggcagagcgacatgtcaaaatcgcctccattgtacttgaaaaagcaaaacgaatg
gttgaatgtggtcatgatgtggtaatcctgctcgactccatcacccgtctggcccgcgcc
tacaacacctgcgcaccggcctcaggcaaaatcctctccggcggtgtcgatgcaaatgcc
ctccagaaacccaaacgcttcttcggcgcagcacgaaacatcgaaaacggaggctcgctc
accattatcgcaacagctctcacagaaaccagttcaaaaatggacgaggtgatcttcgag
gaattcaagggaaccggcaatatggaactccagcttgaccgcaagctctccaacaagcgc
atcttcccggcagtcgacatcatggcatcctcaacccgtcgcgacgacctgctcctgcgc
aatgaaacccttaaccgcatgtggattctacgccgcttcctcagcgatcgcaactcaatc
gaagctatggaattcatcaaggaccgcatggaacgcacttccgacaatgacgaactcctc
cgcacgatgggtgactga
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