Duncaniella sp. B8: FDZ78_14295
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Entry
FDZ78_14295 CDS
T05963
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
dun
Duncaniella sp. B8
Brite
KEGG Orthology (KO) [BR:
dun00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dun03009
]
FDZ78_14295 (rimO)
Enzymes [BR:
dun01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
FDZ78_14295 (rimO)
Ribosome biogenesis [BR:
dun03009
]
Prokaryotic type
ribosomal protein modification factors
FDZ78_14295 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
NAGidase
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
QCP73634
UniProt:
A0AAE6ER03
LinkDB
All DBs
Position
complement(3343079..3344407)
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AA seq
442 aa
AA seq
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MTNKIAVITLGCSKNLVDSERLMVMLSDVGYEVVDAATEAFLEADGWKGVVINTCGFIGD
AKEESINEILAWCQAKTDGRIAALFVMGCLSQRYASQLPAEIPEVDRWYGKTDWPALAVD
LARRSPATAPYDRVITTPRHHAYIKIAEGCNRFCAFCAIPLITGRYKSRPIDEIIAEVRM
LVSRGVREFNVIAQDLTNYGKDLYGKVEIARLVDEMAAVEGVEWIRLHYAYPKDFPLELL
DVMARRDNICKYLDIALQHCADTVLTNMRRHITGAETRSLLAEIRRRVPGIHIRTTLMVG
FPGEGDDEFAELLDFVREQRFERMGAFAYCEEEDTFGARNFEDSIPQEVKDERLSQLMEL
QEKISLEIQEEKVGSVMRVVIDREEPEFYVGRTEFDSPEVDPEVLVSKIFRLEKGRTYNV
KITSALPFELMAEPLAETLDPA
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgacaaataaaatagcagtcatcacccttggctgttcgaaaaaccttgtggattcggag
cgtctgatggtgatgctctccgatgtgggctacgaggttgtcgacgccgccaccgaagcc
ttccttgaagccgacggatggaaaggcgtcgtgataaacacctgcggattcatcggcgat
gccaaggaagaatccattaacgagatcctcgcctggtgccaggccaaaaccgatggccgc
atcgccgcgctttttgtcatgggatgtctctcccagcgctatgcttcgcagcttccggca
gaaataccggaggtagaccgctggtatggcaaaacggactggcctgcgcttgccgtagac
ctcgcacgccgctccccggccactgctccgtatgaccgtgtcataaccacgccccgccac
cacgcctacataaagatagctgaaggttgcaatcgtttctgcgcattctgcgccataccg
ttgataacaggccgctacaagtcgcgcccgattgatgagatcatcgcggaagtccgcatg
cttgtcagtcgcggagtcagagagttcaacgtcatagcccaggatcttactaactatggc
aaagacctttacggcaaggtagagatagcgcgtcttgtcgatgaaatggcggcagtggaa
ggtgtggagtggatacgtctgcattatgcctatccgaaagactttccgcttgaattgctt
gacgtgatggcccgtcgcgacaatatctgcaaatatctcgacattgcgctccagcattgc
gccgatactgtcttgaccaacatgcgccgccacatcaccggagctgaaacccgcagcctt
ctcgccgaaatccgcaggagagtccctggaattcacatccgcaccactctgatggtaggc
tttccgggtgaaggcgatgatgaattcgccgaacttctcgattttgtgcgtgaacagcgc
tttgagcgcatgggcgcttttgcctattgcgaggaagaagacaccttcggcgcgcgtaat
tttgaagattctataccccaggaggtcaaagacgagcgcctgtctcaactgatggaactt
caggaaaagatttcgctggagatccaggaagagaaagttggatcggtgatgcgcgtcgtt
attgaccgtgaagaacctgaattctatgtgggccgcacggagtttgactctcctgaagtc
gatccggaagtgcttgtctccaaaattttcagactggagaagggcagaacatataatgta
aaaataacttcggctcttccttttgaactcatggcggagcctcttgccgaaacattggac
cctgcatga
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