Duncaniella sp. C9: E7745_01475
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Entry
E7745_01475 CDS
T09932
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
duq
Duncaniella sp. C9
Pathway
duq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
duq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E7745_01475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
duq03019
]
E7745_01475
03009 Ribosome biogenesis [BR:
duq03009
]
E7745_01475
Enzymes [BR:
duq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E7745_01475
Messenger RNA biogenesis [BR:
duq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E7745_01475
Ribosome biogenesis [BR:
duq03009
]
Prokaryotic type
rRNA helicases
E7745_01475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CFAP90
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QCD38322
LinkDB
All DBs
Position
358735..360465
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AA seq
576 aa
AA seq
DB search
MTTFEELGVSQPLRKAVEELGFEYPMPVQERVIPRLLGDANDIIALAQTGTGKTAAFGLP
LLQRIDPADHTPQALILAPTRELCLQIGSDLADFSKYIPDVKVLPVYGGSSIESQIRGLK
KGVQIIVATPGRLIDLIKRGVVRLDGVHTVVLDEADEMLNMGFLDSIEEILSYIPADRKM
LLFSATMPPDILKIAKRYMKDYEELVVGTRNEGAENVRHIYYMVNARDKYLALKRVVDNS
PNIYAIVFCRTRRDTQEIADNLIRDGYNAEALHGDLSQQQRDIVMKKFRDRVVSILVATD
VAARGLDVDNLTHVINYGLPDDTAVYTHRSGRTGRAGKSGVSIAIIHSREKGKMREIERI
IGKTFEHKDVPTPEHIIEKQLYNLADRIERVKVNETEIAPYLSGISRKLEWLSEEDLLKR
VISLEFNRLLDYYKDAPKIDFIDAKPSRSERKARKAAAEREHERPKNDREKDRRTAERGF
ERVYVNIGKRDGFFAGNLIEMLNRLINGKRVDVGRIDLLPGYTLFDVKKSDARKVVGALT
GAEFYGKRLHSEIADPERDYSRIAEKRKNKAKKTAS
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgacaacatttgaagaactcggcgtcagccagccgctgcgcaaagccgttgaagagctc
ggattcgaatatcctatgcccgttcaggaacgcgtgatcccgcgcctgctcggcgacgcc
aatgacataatcgccctcgcccagaccggcaccggcaaaaccgcagccttcggactgcct
ctgctgcagcgcatcgaccccgccgaccacactccccaggccctcatcctcgcccccacc
cgcgagctttgcctccagataggcagcgacctggccgacttctcgaaatacatccccgat
gtcaaagtgctcccggtctacggcggctcaagcatcgaaagccagatccgcggactcaaa
aaaggggtccagatcatagtcgccaccccaggccgtctgatcgacctcataaagcgcgga
gtggtccgcctcgacggagtacacaccgtagtgctcgatgaagccgacgagatgctcaac
atgggcttcctcgacagcatcgaagaaatcctctcctacatccccgccgaccgcaagatg
ctgctcttctccgccacaatgccgcctgacatcctcaagattgccaagcgctacatgaaa
gactacgaggaactcgtggtcggaacccgcaacgaaggagcagaaaacgtgcgccacatc
tactacatggtcaacgcccgcgacaaatatctggccctcaagcgcgtggtcgacaactcg
cccaacatctacgccatagtcttctgccgcacccgccgcgacacccaggagatagccgac
aacctcatccgcgacggctacaacgccgaagccctccacggcgacctctcccagcagcag
cgcgacatagtgatgaagaaattccgcgaccgcgtggtctccatactcgtggccaccgac
gtggcggcccgcggactcgacgtcgacaacctcacccacgtcatcaactacggcctaccc
gacgacaccgccgtctacacccaccgctcaggccgcacaggccgagccggcaagtcaggc
gtctcgatagccatcatccactcgcgcgaaaaaggcaaaatgcgcgagatagagcgcatc
ataggcaagaccttcgaacacaaagacgtgcccactcccgaacacatcatcgaaaagcag
ctctacaacctcgccgaccgcatagagcgcgtcaaagtcaacgaaaccgagatagcaccc
tacctctcaggcatctcgcgcaaactcgaatggctctccgaggaagacctgctcaagcgc
gtcatctcgctcgaattcaaccgcctgctcgactactacaaagacgcaccgaaaatcgac
ttcatcgacgccaagccctctcgctcggagcgcaaggcccgcaaggctgccgccgagcgt
gagcacgaacgccccaaaaacgaccgcgagaaagaccgccgaacagccgaacgcggcttc
gagagagtctatgtcaacataggcaagcgcgacggcttcttcgccggaaacctcatcgaa
atgctcaacagactcatcaacggcaagcgcgtcgacgtgggccgcatcgaccttctgcca
ggctacaccctcttcgatgtcaaaaaatccgatgcccgcaaggtggtcggagcgctcacc
ggagccgaattctacggaaagcgcctccacagcgagatagccgatcccgaacgcgactac
agccgcatagccgaaaaacgcaagaacaaagccaaaaagaccgccagctga
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