Duncaniella sp. C9: E7745_10470
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Entry
E7745_10470 CDS
T09932
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
duq
Duncaniella sp. C9
Pathway
duq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
duq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E7745_10470 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
duq03019
]
E7745_10470 (rnr)
03016 Transfer RNA biogenesis [BR:
duq03016
]
E7745_10470 (rnr)
Enzymes [BR:
duq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
E7745_10470 (rnr)
Messenger RNA biogenesis [BR:
duq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E7745_10470 (rnr)
Transfer RNA biogenesis [BR:
duq03016
]
Prokaryotic type
tRNA degradation factors
E7745_10470 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QCD39919
LinkDB
All DBs
Position
2491538..2493784
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AA seq
748 aa
AA seq
DB search
MAQSAKAASSKSNIALAKKVMDFVMQQKNNTYNYKQVAHAIGAKTAVQQRNIALQLVEMA
FNGEIIEVSPGKYKSPQRGNEAIGVFVRRSNGKNSVITDSDGETIFVAERNSMHALNGDR
VKVNIAAHRRGAEPEAEVIEIIEKKEQTFIGTLKVDKHFGYLLTDSKYLATDIFIPKAKL
KSGKTGDKAVVRITEWKDDFKNPSGEVVDILGKAGENNTEIHAILAEFGLPYKYPSTVEK
AADKIGAGITEEVVAQRIDMRDVLTFTIDPADAKDFDDALSFRRLSNGHYEIGVHIADVT
HYVHPDTIIDREAQKRATSVYLVDRVVPMLPEHLCNGICSLRPNEDKLAFSVIFHMDDDG
KVLTSKIARTVIRSDRRFSYEEAQNVIETGLGDCVEAIKKLDELAKILRRQRYENGSVEF
DRAEVKFHIDEAGKPLGVFFKVSKDANKLIEEFMLLANRTVATFVGKPQGKKKAKAFVYR
VHDVPDPSRLADLAAIARTFGYKIKASGTPKEINRSINRMLAEVKGRGEENYLSTLAIRS
MAKAIYTTDNIGHYGLGFEYYTHFTSPIRRYPDMMVHRLLDRYLAGGRSVNLQKLEDQCK
HSSEMEQLAATAERSSIKYKQVEYMQEHIGDKFSGIISGVTEWGLYVELNDNLCEGLVPM
RDLADDYYDFDEKNHCLVGRRHNHRYRLGDNVDIRVARADLEKKQLDFVLLDDNGNALRK
SDKEDDMGSKVSVAEALTQHGKKKRRRK
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atggctcaatcagcaaaagctgcaagctcaaaaagcaacattgccctcgcgaagaaggtg
atggactttgttatgcagcagaagaacaacacatataattataagcaagttgcccatgct
ataggggctaaaaccgcagttcagcagcgcaacatagctttgcagctggttgaaatggca
ttcaacggcgaaatcatagaggtttcgccgggtaaatacaaatctccacagcgtggcaat
gaagctattggtgtgtttgtccgtcgtagtaatgggaaaaattctgtaattactgattct
gatggcgagactattttcgtggctgaacgcaattcgatgcatgctctgaatggcgataga
gtgaaagtcaatatcgcagctcatcgaagaggtgccgagcctgaagcagaggtcatagaa
ataattgagaaaaaggagcagacgttcatcgggactctgaaagtcgacaagcacttcggt
tatcttttgacagattccaaatatctggctacagatatttttatcccgaaggcaaagctt
aaaagcggcaagaccggagataaagctgtggtgcggatcacggaatggaaagacgatttc
aaaaatccaagcggagaggttgtcgatatcctcggcaaggcaggggagaacaacaccgag
atccatgccattctcgctgaatttggattgccttacaaatatccgtcaactgtagaaaag
gctgcggataaaatcggagccggaataacagaggaagtcgtagcgcagcgtatcgatatg
cgtgacgttctcacattcaccattgacccggctgatgcaaaggattttgatgacgcgctt
tcattcagacgtctctcgaacggacattatgagatcggtgttcatatcgcagacgtgacc
cattatgtacatcccgatacgattatagaccgcgaggcgcaaaaacgtgccacttcagtt
tatctggttgaccgtgtcgtgccgatgttgcctgaacacttgtgcaacggcatatgctcg
ttgcgtccgaatgaagacaaactggcattctcggtgatcttccatatggatgacgacggc
aaggtgcttacatcgaaaattgcccgtaccgtgatcagatcagatcgtcgattctcttat
gaagaagctcagaatgtgattgaaaccggtcttggtgattgtgtcgaagccattaagaaa
cttgatgaactggccaagatacttcgccggcagcgttatgagaacggttctgttgaattt
gacagagcggaagtgaaattccatattgatgaagccggcaaacctctgggtgtattcttc
aaagtttctaaagacgccaacaaactaattgaagaattcatgctgcttgccaaccgcaca
gtcgctacatttgtcggcaaaccgcagggcaagaaaaaagccaaggcatttgtctatcga
gtgcatgatgtccctgatccgtcccgtctggctgatcttgccgcaattgccagaacattc
ggctacaaaatcaaagcatcgggaacccccaaggagatcaaccgttcgattaaccgtatg
cttgcggaggtgaagggtagaggagaggaaaattatctgtcgactcttgccatacgctca
atggctaaggctatttacaccactgacaatatcggtcattacggacttggatttgaatat
tatacacattttacatctcctatacgccgttatcctgacatgatggttcatcgcctgctt
gaccgttatctcgcaggtggccgtagcgtaaatcttcagaaacttgaagatcaatgcaaa
cactccagtgaaatggagcagcttgctgctacagccgaacgctcgtctatcaaatacaag
caggttgaatacatgcaggaacatatcggagataaattttccggcattatctccggcgtg
accgaatggggcctttatgtagaactcaacgacaatctttgcgaaggtcttgtgccgatg
cgtgatctggcagacgattactatgattttgacgagaaaaaccattgtctggtaggccgt
aggcataaccatcgttatcgtcttggtgacaatgtggatattcgggtggcacgcgccgac
ctggagaaaaagcaactagacttcgtgttgctcgatgacaatggcaatgccttgcgcaaa
agcgacaaagaagatgatatgggctccaaagtctcagtggccgaagctctgacacagcat
ggcaagaaaaaacgccgccgcaaataa
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