Dermabacter vaginalis: DAD186_16430
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Entry
DAD186_16430 CDS
T04434
Name
(GenBank) hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
dva
Dermabacter vaginalis
Pathway
dva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DAD186_16430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dva03019
]
DAD186_16430
Messenger RNA biogenesis [BR:
dva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DAD186_16430
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
YicC-like_C
Motif
Other DBs
NCBI-ProteinID:
ANP28193
UniProt:
A0A1B0ZJU3
LinkDB
All DBs
Position
complement(1830877..1832568)
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AA seq
563 aa
AA seq
DB search
MTTPFSTKLGTPPKLKNNTLRVTPLGGLGEVGRNMTVFEYEGRLLIVDCGVLFPEEAQPG
VDLILPDFRSIEDRLDDVAAIVLTHGHEDHIGAVPYLLRLKPDIPLVGSQLTLAFVEAKL
REHRIKPYTLAVKEGDVEKFGAFECEFVAVNHSIPDALAVAIRTEAGTVLHTGDFKMDQL
PLDGRLTDLRAFARLGEEGVDLFLVDSTNAEVPGFTVKEREIGPVLDSLFARARQKIVVA
SFSSHVHRVQQVLDSAYAHGRKVAFVGRSMVRNMTIAADMGYLRVPPNTLIDLKKADDIP
DHKIVYMCTGSQGEPMAALGRIANRNHRVEVGEGDIVILASSLIPGNENDVFRVMNGLME
LGAEVVHQANARVHVSGHASEGELLYCYNILRPKNVMPVHGEVRHLIANGKIAQSSGIPR
ENIVLAKDGTVVDLKDGVARAVGEVEVGYVYVDGSSVGEVSEADLKDRRILAEEGFISLF
AVVNSETRELIAGPEIHSRGIAEDDEVFERIKPDIIKALHKAIEDEKGHDTHQLQQAMRR
VVGRFLSQRLRRKPMIIPVVVEA
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
gtgactacacccttttccacgaaacttgggacccctccaaagctcaagaacaacaccctc
cgcgtgaccccactcggcggtctcggcgaggtcggccgcaacatgaccgtcttcgaatac
gaggggcggctcctcatcgttgactgcggcgtgctgttccccgaggaggcccagccgggc
gtcgacctcatcctcccggacttccgctccattgaggaccgtctcgatgacgtcgccgcc
atcgtgcttacgcacggccacgaagaccacatcggtgcggtgccataccttttgcgcctc
aagccggacatccctcttgtgggcagtcagctgacgctcgcgttcgttgaggcgaagctc
cgcgagcaccgcatcaagccgtacacactcgccgtcaaggaaggcgatgtcgagaagttc
ggcgcttttgaatgcgaattcgtcgccgtgaaccactcgatcccggacgcgctcgcggtc
gcgatccgcaccgaggccggtaccgtgctgcacacgggcgacttcaagatggaccagctc
ccgctggacggccgcctgaccgatcttcgcgcttttgcgcgacttggcgaagagggcgtg
gatctgttcctcgtggattcgaccaacgccgaggtccccggcttcacggttaaggaacgc
gaaatcggccccgtgctcgatagtctctttgcgcgtgcacggcagaagatcgtcgtcgcg
agcttctcgagccacgttcaccgcgtgcagcaggtgctcgattcggcgtacgcgcacggg
cgcaaggtcgcctttgtgggccgctcgatggtacgcaacatgacgatcgcggctgatatg
ggctacctcagggttcccccgaacacgctcatcgacctcaaaaaagccgatgacattccc
gaccacaagatcgtgtacatgtgcacgggcagccagggtgagccgatggcggcgctcggg
cgtatcgcgaaccgtaaccaccgcgtcgaggtgggggagggagacatcgtcatccttgcc
tcctcgctcattccgggcaatgaaaacgatgtcttccgcgtgatgaatggactcatggag
cttggcgccgaggtcgtgcaccaggccaatgcacgcgtgcatgtctccggtcacgcgagc
gaaggcgaactgctctactgctacaacatcctgcgcccgaagaacgtgatgcccgtgcac
ggcgaggtgcgacacctcatcgcgaacggcaaaatcgcgcagtcgtcgggcatcccgcgc
gagaacatcgtgctcgcgaaggacggcacggtcgtggacctcaaggatggcgtagcgcgc
gcggtcggtgaggttgaggtcggctacgtgtacgtggacggctcgagtgtgggcgaagtg
agcgaggccgatctcaaggatcgccgcatcctcgccgaagaaggcttcatttccttgttc
gccgtggtcaatagtgaaacgcgcgagcttattgccgggcccgagatccactcgcgaggc
atcgccgaggacgacgaggtgtttgagcggatcaagcccgacatcatcaaggcacttcac
aaggcgatcgaagacgagaagggccacgacacgcatcagcttcagcaggcgatgcggcgc
gtcgtgggtcgcttcctctcgcagcgccttcgccgcaagcccatgattattcccgtggtc
gtcgaggcctga
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