Dermabacter vaginalis: DAD186_16520
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Entry
DAD186_16520 CDS
T04434
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dva
Dermabacter vaginalis
Pathway
dva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DAD186_16520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dva03019
]
DAD186_16520
03016 Transfer RNA biogenesis [BR:
dva03016
]
DAD186_16520
Enzymes [BR:
dva01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DAD186_16520
Messenger RNA biogenesis [BR:
dva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DAD186_16520
Transfer RNA biogenesis [BR:
dva03016
]
Prokaryotic type
tRNA degradation factors
DAD186_16520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
KH-I_KHDC4-BBP
RNase_PH_C
KH_2
KH_KhpA-B
DUF5006
RNA_helicase_helical
DUF5078
Motif
Other DBs
NCBI-ProteinID:
ANP28202
UniProt:
A0A1B0ZK16
LinkDB
All DBs
Position
complement(1839705..1841948)
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AA seq
747 aa
AA seq
DB search
MTMEGHNIHSTIATIDNGSYGKREVRFETGRLAKQAAGAVAVYLDDDTMVFSATAVSNQP
KEQFDFFPLTVDVEERMYAAGRIPGSFFRREGRPGTDAILAARLTDRPLRPAFVKGLRNE
VQVVLTVMAVNPDDAYDVVGINGASASTQISGLPFSGPIGGVRIALMPSAEGGQWIAFPT
FSQLDEAVFSMVVAGRIVEDDVAIMMVEAEATDNAWSLIKEQGAVAPTEEVVAQGLEAAK
VYIRTLCEAQKELAAKAAKPVREFPLFLDYQDDAYDLVAEAATDRLREVMSIAGKQEREE
ATETLLAQVKEELAEKLDEREKEITGAFRALTKKVVREKILTEGVRIDGRGLRDIRQLSA
EVEVLPRVHGSAIFERGETQILGVTTLNMLKMEQQIDGLSPVDHKRYIHHYNFPPYSTGE
TGRVGSPKRREIGHGMLAERALVPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLA
LLNAGVPLKAPVAGIAMGLVSDTVNGETKYAALTDILGAEDAFGDMDFKVAGTSEFVTAI
QLDTKLDGIPASVLAGALSQAREARLHILSVLEQAIDQPDEMSPNAPRVLAVTIPVDKIG
AVIGPKGQMINQIQDDTGADITIEDDGTVYIGATDGPSAEAARAAVNAIANPLVPEVGER
YLGTVVRVVDFGAFISLTPGKDGLLHVSQLRKLNGGKRVENVEDVVSVGQKLEVEIREID
SRGKISLAVAADDDDAEETGDTKGDAK
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
gtgaccatggaaggccacaacattcattcaacgatcgccacgatcgacaacggctcctac
ggcaagcgcgaggtgcgctttgaaaccggccgcctcgcaaagcaggccgcgggtgccgtc
gccgtctacctcgacgacgacacgatggtgttcagcgcaaccgctgtctccaatcagccg
aaggagcagttcgacttcttcccgctgaccgttgacgtcgaagagcgcatgtacgccgcg
ggtcgaatccccggctcgttcttccgtcgcgagggtcgcccgggcaccgacgcgatcctc
gcagcccgcctcaccgaccgcccgctgcgcccggcgttcgtcaagggcctgcgtaacgag
gtccaggttgttctcacggtgatggccgtgaaccctgacgacgcgtatgacgtcgtgggc
atcaacggtgcttcggcatcgacccagatctcgggcctcccgttctccggccccatcggt
ggcgtgcgcatcgcgctcatgccgagcgccgagggcggccagtggatcgccttcccgacc
ttcagccagctcgatgaggccgtgttctcgatggttgtcgcgggccgcatcgttgaagac
gacgtcgcgatcatgatggtcgaggccgaagcgacggacaacgcctggtcgcttatcaag
gagcaaggcgcggtggcgccgaccgaagaggtcgtcgcccagggcctcgaagctgccaag
gtctacatccgcacgctgtgcgaggcgcagaaggaactcgccgcgaaggccgcgaaaccc
gttcgcgagttcccgctcttcctcgactaccaggacgatgcgtacgatctcgttgccgaa
gcggcgaccgatcgccttcgcgaggttatgagcatcgcgggcaagcaggaacgcgaagag
gctaccgagaccctgctcgcgcaggtcaaggaggagctcgcggagaagctcgacgagcgc
gagaaggaaattactggcgccttccgtgcgctcacgaagaaggtcgtgcgcgagaagatc
ctcacggagggcgtgcgcatcgacggtcgcggccttcgcgatattcgccagctctcggcc
gaggtcgaggtgctcccgcgcgtgcacggctcggcgatcttcgagcgcggcgagacccag
attctcggcgtgaccaccctcaacatgctcaagatggagcagcagatcgacggtctctcg
ccggtcgatcacaagcgctacatccaccactacaacttcccgccctactcgaccggtgaa
acgggccgcgtgggctcgcccaagcgccgcgaaatcggccacggcatgctcgccgagcgc
gctctcgttccggtgctccccagccgtgaggaattcccctacgcgattcgtcaggtgtcg
gaggctcttggctcgaacggctcgacgtcgatgggttccgtgtgtgcctcgactctcgcg
ctcctgaacgccggtgtgccgctcaaggctcccgttgccggtatcgccatgggtctcgtg
tccgacacggtgaacggcgagacgaagtacgcggctctcaccgacattctcggtgccgag
gatgcctttggcgacatggacttcaaggtcgcaggcacgtcggagttcgtgacggctatt
cagctcgacacgaagcttgacggcatccccgcttccgtcctcgcaggcgccctctcgcag
gctcgcgaagctcgcttgcacatcctttcggttctcgaacaggccatcgaccagcctgac
gagatgagccccaacgcgccgcgtgttctcgccgtcaccatcccggtggacaagatcggc
gcggtcatcggcccgaagggacagatgatcaaccagatccaggacgacaccggagcggac
atcacgatcgaggacgacggcaccgtgtacatcggcgcaaccgacggcccctcggccgag
gctgcgcgtgcggccgtcaacgcgattgcgaacccgctcgttcccgaggtcggcgagcgc
tacctcggtacggtcgtgcgtgtcgtcgacttcggtgcgttcatttccctcaccccgggc
aaggacggcctgctgcacgtctcgcagctgcgtaagctcaacggcggcaagcgcgtggag
aatgtcgaggacgtcgtgagcgtcggccagaagctcgaggtcgagatccgcgagatcgac
tcgcgcggcaagatctcgctcgcggtggcggctgacgacgacgacgctgaagagaccggc
gacaccaagggcgacgccaagtaa
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