Dactylosporangium vinaceum: Dvina_13155
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Entry
Dvina_13155 CDS
T07478
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dvc
Dactylosporangium vinaceum
Pathway
dvc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dvc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dvina_13155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvc03019
]
Dvina_13155
03009 Ribosome biogenesis [BR:
dvc03009
]
Dvina_13155
Enzymes [BR:
dvc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Dvina_13155
Messenger RNA biogenesis [BR:
dvc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dvina_13155
Ribosome biogenesis [BR:
dvc03009
]
Prokaryotic type
rRNA helicases
Dvina_13155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WSD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UAB98938
LinkDB
All DBs
Position
complement(2964142..2965884)
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AA seq
580 aa
AA seq
DB search
MTASFDDGDVTGFGELGLRDELLKALTGLGYEEPTPIQREAIPPMLEGRDLLGQAATGTG
KTAAFALPLLQRLPAPGGDNPSALVLVPTRELAVQVSEAIHRYGRDLGVRVLPIYGGQPI
GRQLRSLEFGVDVVVATPGRALDHLGRGTLRLHDLHVVVLDEADEMLDMGFAEDIEAILA
ATPEDRQTVLFSATMPPRIDGLASSHLTDPVRIQIGREPTPAGEAPLVRQMAYVVPRAHK
PAALGRVLDVEAPGAAIVFCRTRDEVDQLTETLNGRGYRAEALHGGMGQEQRDRVMARLR
NGTADLLVATDVAARGLDVEHLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPR
EHRMLKTIERVTKQRIIIEKVPSVADLRARRMELTRAKLHEILVAEDGTERFRAIVESLG
DEFDPMEIALAAVKFAHEATAVGENDEEEIPDVTLRQPRDRDDRQGQGGGPNPNRRVSVR
DADGRGRGRETGGRRAPTGGMTRLFVGAGRAAGIRPQDLVGAITGESSLTGRDVGAIEIA
DRFALVEVPDGAVDEVIDTLRRTTLKGRRPVVRRERPRTD
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgccagcttcgatgatggggacgtgaccggcttcggcgagctcgggttgcgcgat
gaactgctcaaagccctgaccggtctcggctacgaggagccgacgccgatccagcgcgag
gccatcccgccgatgctcgaagggcgggacctgctggggcaggccgccaccggtaccgga
aaaaccgccgcattcgctctgccgctcctgcaacggctccccgcgcccggcggcgacaac
ccgtcggcgctggtgctggtccccacccgggagctcgccgtgcaggtgtcggaggcgatc
caccgatacggccgcgacctcggcgtccgcgtcctgcccatctacggcggtcagccgatc
ggccggcagctgcgctcgctggagttcggcgtcgacgtggtcgtcgccacgcccgggcgc
gcgctcgaccatctcggccgcgggaccctgcgcctgcacgacctgcacgtcgtggtcctc
gacgaggccgacgagatgctcgacatgggcttcgccgaggacatcgaggcgatcctggcc
gcgacccccgaagaccgccagacggtgctgttctcggccacgatgccgccgcgcatcgac
ggcctggccagcagccacctgaccgacccggtccggatccagatcggccgcgagcccacc
ccggccggtgaggcgccgctggttcgccagatggcctatgtggtaccgcgggcccacaag
ccggccgcgctcggtcgcgtgctggacgtcgaggcgccgggcgcggcgatcgtcttctgc
cggacccgcgacgaggtcgatcagctcaccgagacgctcaacggccgggggtaccgggcc
gaggccctgcacggcggcatgggccaggagcagcgcgaccgggtcatggcccgcctccgc
aacggcaccgccgacctgctcgtggccaccgacgtcgccgcccgcggcctggacgtcgag
cacctcacgcacgtggtgaactacgacgtgccctcggcgccggagtcgtacgtgcaccgg
atcggccgcgtgggccgggccggccgcgagggcgtcgccatcaccctggccgagccgcgc
gagcaccgcatgctcaagaccatcgagcgcgtcaccaagcagcgcatcatcatcgagaag
gtcccctcggtcgcggacctgcgcgcccggcgcatggagctcacccgggccaagctccac
gagatcctggtggccgaggacggcacggagcgcttccgcgcgatcgtggagtccctgggt
gacgagttcgacccgatggagatcgcgctggccgctgtcaagttcgcccacgaggcgacg
gcggtcggcgagaacgacgaggaggagatccccgacgtcacgctccgccagccccgcgac
cgcgacgatcgccagggccagggcggcggccccaacccgaaccgccgcgtgagcgtccgc
gacgccgacggccgaggccggggccgcgagaccggcgggcgccgcgcccccacgggcggc
atgacccgcctgttcgtgggtgccggccgcgccgccggcatccgcccccaggacctggtc
ggcgccatcaccggcgagtcctcgctgaccggccgcgacgtcggcgcgatcgagatcgcc
gaccggttcgccctggtcgaggtcccggacggcgccgtcgacgaggtcatcgacaccctg
cgccgcacgacgctgaagggccgccgcccggtggtgcgccgcgagcgcccccgcacggac
tag
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