Dactylosporangium vinaceum: Dvina_13210
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Entry
Dvina_13210 CDS
T07478
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
dvc
Dactylosporangium vinaceum
Pathway
dvc03030
DNA replication
dvc03430
Mismatch repair
dvc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dvc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Dvina_13210 (dnaE)
03430 Mismatch repair
Dvina_13210 (dnaE)
03440 Homologous recombination
Dvina_13210 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dvc03032
]
Dvina_13210 (dnaE)
03400 DNA repair and recombination proteins [BR:
dvc03400
]
Dvina_13210 (dnaE)
Enzymes [BR:
dvc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Dvina_13210 (dnaE)
DNA replication proteins [BR:
dvc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Dvina_13210 (dnaE)
DNA repair and recombination proteins [BR:
dvc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Dvina_13210 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
UAB98947
LinkDB
All DBs
Position
2980737..2984276
Genome browser
AA seq
1179 aa
AA seq
DB search
MADSFVHLHVHTEYSMLDGAARLKEMFAEANRLGMPAVAITDHGNMHGAYDFYKQAKGAG
VTPILGVEAYVAPESRLHKQRVKWGRPDQKNDDVSGSGGYTHKTIWARNKTGLHNLFRLN
SRASIEGHFVKWPRMDAEIIAEHAEGLMATTGCPSGEVQTRLRLDQFDEALKAAAKYQDI
FGKEHYFLEVMDHGLDIERRVREGLTEISKRLNIPPVVTNDSHYTHQAQAEAHDVLLCVQ
TAANINDPNRFRFGGSGYYLKSADEMRAVDTSELWQAGCKNTLLVAEKVDTAGMFEFHNL
MPRFPVPEGETEESFFRAEVARGMARRFPNGVDEVHQKQADYETDIILSMGFPAYFLVVS
DFIMWAKNEGIAVGPGRGSAAGSLVAYAMGITDLDPLPHGLIFERFLNPDRVSMPDIDID
FDERRRGDVIRYVTEKWGDDRVAQIATFGTIKAKAAIKDSARVLGYPFAVGDKITKAMPP
AVMGKDIPLSGIFDPNHPRYSEAVEFRTLYDSDPDVKKVVETAKGLEGLIRQTGVHAAGV
IMSAEPLIDHVPLMRRDADGAIITQFDYPTCETLGLLKMDFLGLRNLTIIDDAVKNIKRR
GIELDLLSLELDDKPAYELLARGDTLGVFQLDGGPMRSLLRLMKPDNFEDISAVLALYRP
GPMGANSHTNYALRKNGQQDITPIHPELEEPLKEILGPTYGLIVYQEQVQRAAQKLAGYT
LGQADLLRRAMGKKKKEVLEKEYIPFRDGMRANGYSDEAIKSLWDVLVPFADYAFNKAHT
AGYGLVSYWTAYLKANYPAEYMAALLTSVGDDKDKMAMYLAECRRMGIEVLPPDVNESIG
PFAPVGSNIRFGLAAVRNVGHNVVDAIVRCRQTANGLYKDFDDFLSKVDAVACNKKTIES
LIKAGAFDSMKHPRRGLLAIHADAIDNYADLKKNEAIGQFDLFGDLLGGDDAAPGGGTAM
AVQIPDIEWDKRELLTFEREMLGLYVSDHPLFGLESVLSKAADTEISRLSEEGAIADGTV
VTLAGMLTGVQRRITKQGKPWASASLEDLGGAVEALFFPNTYELVGQYIAEDAIVVVKGR
VDRRDETPRLMAMDLSIPDVSTADENRPVVLSLPATRCTPPLVDRLKEILVNHPGKAEVH
VKLLNGSKVTLLRLGPYHVNNTTALKGDLKALLGPNSFS
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atggccgactcgttcgtgcatctccacgtgcacaccgagtactccatgctcgacggcgcc
gcgcgcctcaaggagatgttcgcggaggcgaaccggctcggcatgccggccgtggcgatc
accgaccacggcaacatgcacggcgcgtacgacttctacaagcaggccaagggtgcgggc
gtgacgccgatcctcggggtcgaggcgtacgtggcgccggagtcgcggctgcacaagcag
cgcgtcaagtgggggcggccggaccagaagaacgacgacgtgtccggctccggcggctac
acgcacaagacgatctgggcccgcaacaagacaggcctgcacaacctcttccggctcaac
tcgcgggcgtcgatcgaggggcacttcgtcaagtggccccggatggacgccgagatcatc
gccgagcacgccgagggcctcatggccacgaccggctgcccgtcgggtgaggtgcagacg
cggctgcggctcgaccagttcgacgaggcgctgaaggcggcggccaaataccaggacatc
ttcggtaaggagcactacttcctcgaggtcatggaccacgggctcgacatcgagcggcgg
gtccgcgagggtctgaccgagatctccaagcggctcaacatcccgccggtcgtgacgaac
gactcgcactacacgcaccaggcccaggccgaggcccacgacgtgctgctgtgcgtgcag
accgcggcgaacatcaacgaccccaaccggttccggttcggcgggtcgggctactacctc
aagtcggccgacgagatgcgggccgtcgacacgtccgagctgtggcaggccgggtgcaag
aacacgctgctggtggccgagaaggtcgacaccgccgggatgttcgagttccacaacctg
atgccgcgcttcccggtgcccgagggtgagaccgaggagtcgttcttccgggccgaggtc
gcccggggcatggcccggcggttcccgaacggcgtcgacgaggtccaccagaagcaggcc
gactacgagaccgacatcatcctgtcgatgggcttcccggcgtacttcctggtcgtctcc
gacttcatcatgtgggccaagaacgagggcatcgctgtcgggccggggcgtggctcggcg
gccggaagccttgtcgcatacgcgatgggcatcaccgacctcgatccgctcccgcacggc
ctgatcttcgagcggttcctcaacccggaccgcgtctcgatgcccgacatcgacatcgac
ttcgacgagcgccggcgcggtgacgtcatccggtacgtgaccgagaagtggggcgacgac
cgggtcgcgcagatcgccacgttcggcacgatcaaggccaaggccgcgatcaaggactcg
gcccgggtgctgggctacccgttcgcggtcggcgacaagatcaccaaggcgatgccgccc
gcggtgatgggcaaggacatcccgctctccggcatcttcgacccgaaccatccccggtac
tccgaggcggtcgagttccgcaccctgtacgacagcgaccccgacgtgaagaaggtcgtc
gagaccgcgaagggcctcgagggcctgatccgccagaccggtgtccacgccgccggcgtc
atcatgtccgccgagccgctcatcgaccacgtcccgctcatgcggcgcgacgccgacggg
gcgatcatcacgcagttcgactacccgacctgcgagacgctcggcctgctgaagatggac
ttcctggggctgcgcaacctgacgatcatcgacgacgcggtgaagaacatcaaacgccgc
gggatcgagctcgacctgctctccctcgagctggacgacaagccggcctacgagctgctg
gcccgcggcgacacccttggcgtgttccagctcgacggcggcccgatgcgctcgctgctg
cggctgatgaagccggacaacttcgaggacatctccgcggtgctggccctgtaccggcct
ggccccatgggcgccaactcccacacgaactacgccctgcgcaagaacggccagcaggac
atcaccccgatccatccggagctggaggagcctctcaaggagatcctcggccccacctac
gggctgatcgtgtaccaggagcaggtccagcgcgccgcgcagaagctggccgggtacacc
ctcgggcaggccgacctgctgcgccgggccatgggcaagaagaagaaagaggtcctggag
aaggagtacatcccgttccgcgacggtatgcgcgccaacggctacagcgacgaggcgatc
aagagcctctgggacgtgctcgtcccgttcgcggactacgccttcaacaaggcccacacc
gccggttacggcctggtgtcctactggacggcgtacctcaaggccaactacccggccgag
tacatggccgccctgctcacgagcgtcggcgacgacaaggacaagatggcgatgtacctg
gccgagtgccggcgcatgggcatcgaggtcctcccgcccgacgtcaacgagtcgatcggc
ccgttcgccccggtcggcagcaacatccggttcggcctggccgccgtgcgcaacgtcggc
cacaacgtcgtcgacgcgatcgtgcgctgccggcagaccgcgaacgggctgtacaaggac
ttcgacgacttcctgtccaaggtcgacgcggtcgcctgcaacaagaagacgattgaatcc
ctgatcaaggcgggcgcgttcgactcgatgaagcacccgcggcggggcctgctggccatc
cacgcggacgccatcgacaactacgccgacctcaagaagaacgaggcgatcgggcagttc
gacctcttcggcgacctgctcggcggcgacgacgccgccccgggtggcggcacggcgatg
gcggtgcagatccccgacatcgagtgggacaagcgcgagctgctcacgttcgagcgggag
atgctcggcctctacgtctccgaccacccgctgttcggcctggagtcggtgctgtcgaag
gcggccgacaccgagatcagccggctgtcggaagaaggagcaatcgccgacggtaccgtc
gtgaccctcgccggcatgctcaccggcgtccagcggcgcatcaccaagcagggcaagccg
tgggcctcggcgtccctggaggacctcggcggcgcggtcgaggcgctgttcttccccaac
acctacgagctggtcgggcagtacatcgccgaggacgcgatcgtggtcgtcaagggccgc
gtcgacaggcgcgacgagacgccccggctgatggcgatggacctgtcgatcccggacgtc
agcaccgccgacgaaaaccgcccggtcgtcctgtcgctgccggccacccgctgcacgccg
ccgctcgtcgaccggctcaaggagatcctggtcaaccacccgggcaaggccgaggtgcac
gtcaagctgctcaacggctccaaggtgacgctgctgcgcctggggccgtaccacgtgaac
aacaccaccgccctcaagggcgacctcaaggcgctgctcggtcccaacagcttcagctga
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