Dactylosporangium vinaceum: Dvina_38710
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Entry
Dvina_38710 CDS
T07478
Name
(GenBank) polysaccharide lyase family 1 protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
dvc
Dactylosporangium vinaceum
Pathway
dvc00040
Pentose and glucuronate interconversions
dvc01100
Metabolic pathways
dvc02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
dvc00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
Dvina_38710
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Dvina_38710
Enzymes [BR:
dvc01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
Dvina_38710
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GFIT
Motif
Pfam:
Pectate_lyase_4
F5_F8_type_C
Motif
Other DBs
NCBI-ProteinID:
UAB94077
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Position
complement(8651085..8652650)
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AA seq
521 aa
AA seq
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MRRAVAWRLLPVLTAGAVGVGFVALQAMPEAAAATGGVTGYATQNGGTTGGAGGAVVKAT
TGTAIHQALCGRASDTTPITIQVEGTITVGNTAKVSGSCNTAAGVIELKQISNVTIIGVG
SGAIFDQIGIHIREAKNIIIQNVTVRNVKKSGSPTSNGGDAIGMESDVSNVWVDHNTLYA
SGGEDEGYDSLIDMKAGTKYVTVSYNTLRNSGRGGLIGSSDSDTGNGPVTFHHNIYENID
SRTPLLRAATAHIYNNYYLGLTKSGINPRDGGKAKVDNNYFKNSADVLGTFYTDLMGSWQ
VSGNIFDNVTWSAPGTENHPAGPNVTSTTTISVPYSYSLDPASCVPSVLASTAGAGKGLQ
VSNGSCTPTSPTAGPTTSSPRPTSASPTPSRTAGPTPTQGGGTNLSIGAGADGSSKGSGT
SYGNVIDGNLSTYWSPSGTTGSISVKWSAATSISRITIREASGATGRIGSYRVLNADTGA
VLASGSGAGTVSFTKTSLKKVTFEITGASGTPQIAEFETYA
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgagcagtcgcatggcggcttctgccggtgctgaccgcgggcgcggtcggtgtc
gggttcgtcgcgttgcaggcgatgcccgaggcggccgccgcgaccggcggggtcacgggc
tacgccacgcagaacggcggcaccacgggcggggccggcggggcggtggtgaaggcgacc
accggtaccgccatccaccaggccctgtgcggccgggccagtgacaccaccccgatcacg
atccaggtcgagggcaccatcaccgtcgggaacaccgccaaggtttccggcagctgcaac
accgcggccggcgtgatcgagctcaagcagatcagcaacgtcacgatcatcggcgtgggc
agcggtgcgatcttcgaccagatcggcatccacatccgcgaggccaagaacatcatcatc
cagaacgtgacggtccgcaacgtcaagaagtcgggctcgcccacgtccaacggcggcgac
gcgatcggcatggagagcgacgtcagcaacgtgtgggtcgaccacaacacgctgtacgcg
tccggcggcgaggacgagggctacgactcgctcatcgacatgaaggccggcaccaagtac
gtcaccgtctcctacaacaccctgcgcaactccggccgcggcggcctcatcggctccagc
gacagcgacacgggcaacggcccggtcacgttccaccacaacatctacgagaacatcgac
tcgcgcacgccgctgctgcgcgcggccacggcccacatctacaacaactactacctgggc
ctgaccaagtccggcatcaacccgcgcgacggcggcaaggccaaggtcgacaacaactac
ttcaagaactccgccgacgtcctcggcacgttctacaccgacctgatgggctcctggcag
gtcagcggcaacatcttcgacaacgtgacctggagcgcccccggcaccgagaaccacccg
gccggccccaacgtcacgtcgaccaccaccatcagcgtcccctactcctactcgctcgac
ccggccagctgcgtgccgagcgtgctggccagtacggccggcgccggcaagggcctgcag
gtgtcgaacggcagctgcaccccgaccagcccgaccgccggcccgaccacctcttcgccc
cggccgacgagcgcgagcccgaccccgagccggacggccggcccgaccccgacgcagggc
ggcggcacgaacctgagcatcggcgccggcgcggacggctccagcaagggcagcggcacc
agctacggcaacgtgatcgacggcaacctgagcacgtactggtcgcccagcggcaccacc
ggctccatctccgtcaagtggagcgccgccacctcgatctcccggatcaccatccgcgag
gcgtccggcgcgacgggccgcatcggcagctaccgggtcctcaacgccgacaccggcgcg
gtcctggcctccggctccggcgcgggcaccgtctccttcacgaagacgtcgctgaagaag
gtgaccttcgagatcaccggcgcgagcggtaccccgcagatcgccgagttcgagacctac
gcctga
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