Dactylosporangium vinaceum: Dvina_47695
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Entry
Dvina_47695 CDS
T07478
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dvc
Dactylosporangium vinaceum
Pathway
dvc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dvc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dvina_47695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvc03019
]
Dvina_47695
03009 Ribosome biogenesis [BR:
dvc03009
]
Dvina_47695
Enzymes [BR:
dvc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Dvina_47695
Messenger RNA biogenesis [BR:
dvc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Dvina_47695
Ribosome biogenesis [BR:
dvc03009
]
Prokaryotic type
rRNA processing factors
Dvina_47695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
UAB95611
LinkDB
All DBs
Position
complement(10622443..10625271)
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AA seq
942 aa
AA seq
DB search
MFDNESASGETTGEEPVAAAANAEETTAPVRRTRRRTTKAAADAPAAEPVDPVEAPAEEP
APTTTRRRRKVTPAAEAAETGDSGQQALPLEETPVPVKATRARRSRAKVVEPEPEPEPLP
IAAAEEPDEEPLAEELASEEAEEDSDTPEELEPLVVEEEEPPARRGRRAAPVQLLFMPPS
EQAAPVARVERAVERVVERAEDEDFAEEEPVSRGRRRRRGRGASEDVLAEAPVEVVEAPV
ETDEAETDDDDDDDEDGLDANARRRRRRGRRGRGRGRGTAGDELDEGDETAEADGEEAAD
GEEPEASADEDGEEDGEGLTRRRRRRRRKGSTDTEAGDDPHVVVKIREPRTVTRDRDEVQ
GVSGSTRLEAKRQRRRDGREQRRTRPPILSESEFLARREAVDRTMVIRQKNDRTQIAVLE
DKVLVEHYVTRASSSSMVGNVYLGRVQNVLPSMEAAFVDIGRGRNAVLYAGEVNWDATGL
EGRTRTIEQALKSGDSVLVQVTKDPIGTKGARLTSHIALSGRHLVYVPHGNASGISRKLS
DVERKRLRDVLKNLVPDGAGVIVRTAAEGASEDDLERDVTRLQAQWEAIQEKSRGSSAPA
PLYEEPELVVRVVRDLFNEDFRELVIQGNEAYESVEPYLSHVSPDLVDRVRRYTGTGDVF
ADLRIDEQLIKALDRRVFLPSGGSLVIDRTEAMTVVDVNTGKYTGAGGNLEETVTRNNLE
AAEEIVHQLRLRDLGGIIVIDFIDMVLESNRELVLRRLTECLGRDRTKHQVTEITSLGLV
QMTRKRVGQGLLEAFSETCEVCKGRGLIIHTEPIPEKRGGGGNGGGGHNGGHNGGGGHSN
AVAKVASATSAPGVSSGVEEADAPAPRSRRRGRRGATAVAEEETAEAVTAVHDTQDAAEE
EGFAPIASEDDPDNAEDDDEEGAGNGARRRTRRGGVRRRTRP
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacaacgagtcggcgagcggcgagaccaccggcgaagagccggtggctgctgca
gccaacgctgaagagaccactgcccctgtgcggcgcacccgccgccggaccaccaaggcc
gccgccgacgcgccggccgccgagcccgtcgacccggtggaagcaccggccgaggagccg
gctcctaccaccacccgccgccggcggaaggtgacaccggccgccgaggccgccgaaacc
ggcgattccgggcagcaggcgcttccgctcgaggagacgcccgtgccggtcaaggccacc
agggcccggcgcagccgggcgaaggtcgtcgagccggagccggagcccgagccgctgccc
atcgcggccgcggaggagcccgacgaggagcccctggccgaggagctcgcctccgaggag
gccgaggaggactcggacacgcccgaggagctcgagcccctggtcgtggaggaagaggag
ccgccggcccgccggggccgccgcgccgcgcccgtccagctgctgttcatgccgccgagc
gagcaggccgcgcccgtcgcccgggtcgaacgggccgtcgagcgggtcgtcgagcgcgcc
gaggacgaggacttcgccgaggaggagccggtcagccggggacgccggcggcgccggggc
cggggcgcgagcgaggatgtcctggccgaggcgccggtcgaggtggtcgaggcgcccgtc
gagaccgacgaggccgagaccgacgatgacgacgatgacgacgaggacggcctcgacgcc
aatgcccgccgccggcgccgccgcggtcgccgcggccgtggccgtggccgcggtaccgcc
ggggacgagctcgacgagggcgacgagacggccgaggccgacggcgaggaagccgccgac
ggcgaggagcccgaggcgtccgccgacgaggacggtgaggaggacggcgagggcctgacc
cgccgccgtcgccgccgccgccgcaagggctccaccgacaccgaggccggcgacgatccg
cacgtggtcgtcaagatccgtgagccgcggaccgtgacccgcgaccgcgacgaggtccag
ggcgtctccggctcgacccggctggaggccaagcgccagcgccgccgggacggccgcgag
cagcgccgcacccgcccgccgatcctcagcgagagcgagttcctggcccgccgcgaggcc
gtcgaccgcacgatggtcatccggcagaagaacgaccgcacgcagatcgccgtgctcgag
gacaaggtgctcgtcgagcactacgtcacccgggcgtcgtcgagctcgatggtcggcaac
gtgtacctcggccgtgtccagaacgtgctgcccagcatggaggccgcgttcgtcgacatc
ggccggggccgcaacgccgtgctctacgccggtgaggtcaactgggatgccaccgggctc
gagggccgcacccgcaccatcgagcaggcgctgaagtccggcgactcggtgctcgtgcag
gtcaccaaggacccgatcggcaccaagggcgcccgcctcaccagccacatcgcgctgtcc
ggccggcacctggtctacgtgccgcacggcaacgcctcgggcatcagccgcaagctctcc
gacgtggagcgcaagcgcctgcgcgacgtgctcaagaacctcgtgcccgacggcgccggc
gtgatcgtgcgcaccgcggccgagggcgcctccgaggacgacctcgagcgcgacgtcacg
cggctgcaggcgcagtgggaggccatccaggagaagtcgcgcggcagcagcgcgccggcc
ccgctctacgaggagcccgagctcgtcgtgcgggtcgtgcgcgacctgttcaacgaggac
ttccgcgagctggtcatccagggcaacgaggcctacgagtcggtcgagccctacctgtcg
cacgtctcgcccgacctggtcgaccgggtgcgccgctacaccggcaccggcgacgtcttc
gccgacctgcgcatcgacgagcagctgatcaaggccctggaccggcgggtcttcctgccc
tccggcggcagcctggtcatcgaccgcaccgaggcgatgaccgtcgtggacgtcaacacc
ggcaagtacaccggcgccggcggcaacctcgaggagacggtcacccgcaacaacctcgag
gcggccgaggagatcgtccaccagctgcggctgcgtgacctcggcggcatcatcgtcatc
gacttcatcgacatggtcctggagtccaaccgcgagctggtgctgcgccggctgaccgag
tgcctgggccgggaccggaccaagcaccaggtcaccgagatcacctccctgggcctggtc
cagatgacccgcaagcgggtcgggcagggcctgctggaggcgttcagcgagacctgtgag
gtctgcaagggccgcggcctgatcatccacaccgagccgatcccggagaagcgcggtggc
ggcggcaacggtggtggcggccacaacggcggccacaacggcggtggcggccacagcaac
gccgtggccaaggtcgcctcggccacgtccgcgccgggggtcagcagcggtgtggaggag
gccgacgcacccgcgccgcgcagccgccgccggggccgccgcggtgccaccgcggtcgcc
gaggaggagaccgccgaggccgtgaccgctgtccacgacacccaggacgccgcggaggag
gagggcttcgcgcccatcgcctccgaggacgaccctgacaatgccgaggacgacgatgag
gagggcgcgggcaacggagcccgccgccgcactcgccggggtggcgttcgccgccggacc
cggccctga
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