Dactylosporangium vinaceum: Dvina_49860
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Entry
Dvina_49860 CDS
T07478
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dvc
Dactylosporangium vinaceum
Pathway
dvc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dvc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Dvina_49860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dvc03021
]
Dvina_49860
03400 DNA repair and recombination proteins [BR:
dvc03400
]
Dvina_49860
Enzymes [BR:
dvc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Dvina_49860
Transcription machinery [BR:
dvc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Dvina_49860
DNA repair and recombination proteins [BR:
dvc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Dvina_49860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
1-cysPrx_C
Motif
Other DBs
NCBI-ProteinID:
UAB95987
LinkDB
All DBs
Position
complement(11090936..11094823)
Genome browser
AA seq
1295 aa
AA seq
DB search
MLDVNYFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFASYVITSVDKEARHRDLATLENEVSAEKRQAENARDSEIEKRAAKLEQD
LAELEAEGAKADVRRKVKEAGEREMRQMRDRAQREIDRLDEVMDTFRKLERKNLITDELL
YRELRDRFGEYFNGAMGAEAIKALLENLDLEDEAEQLRETIRSGKGQRKIRALKRLKVVA
AFLNTANSPLGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PVVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHVPLSAEAQAEARILMLSSNNILKPADGKPVTMPTQDMVIGLYHLSHIQKNLLGEGR
TFSSDAEARMAFDNGELHLQAPVKIRLRDIIGVDNGAGAEPWEAPEGWQPGEPVIVETTL
GRVLFNEALPVGYRFVNYEIRKGQLSAIVNDLAERFPKVSLAAALDALKLAGFHWATWSG
VTIGMEDVIQPPRKREILERYEKEAERIDKQYQRGLMTAEERRGELIEIWTKATGEVAKE
MESALPRENPLWKMINSGARGNLLQLRQIAAIRGLVANPKGEIIPRPIKASYREGLSVLE
YFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRAIPMAVGELADGV
LRIHQHAETGVHARTLADDVRDKDGRIVAERGTDINSIVVDLLIAAGTENVRVRSVLTCE
SKLGVCGACYGRSLPTGKTVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGEDITQGL
PRVTEIFEARVPKGKAPIADTPGRVRIEDGERMRKIIIVPDDGSDEIVHDKLSRRVKLRI
QDGEHVEVGEKLTEGTIDPHELLRIMGPRAVQVHLTSEVQEVYRSQGVLIHDKHIEIIIR
QMLKRVTVIDSGSTEFLPGVLVDRAMFEAENRRVVAEGGEPAAGRPVLMGITKASLATES
WLSAASFQETTRVLTDAAIHARSDSLIGLKENVIIGKLIPAGTGISKYRSIRVEPTEEAK
AKVYSMTGYPEADYGFGPASGQAVPLDDFDLGSFR
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaactacttcgacgagctccgcatcggcctggccacagccgacgacatt
cggcagtggtcgcacggcgaggtcaagaagcctgagacgatcaactaccgcaccctgaag
ccggaaaaggacgggctcttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcggtaagtacaagcgggtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccgggcgaaggtccgccgtgagcgcatgggccacatcgagctcgccgcgccg
gtcacgcacatctggtacttcaagggtgtgcccagccggctcggctacctgctcgacctg
gctccgaaggacctcgagaagatcatctacttcgcgtcgtacgtgatcaccagcgtcgac
aaggaggcccgccaccgcgacctggcgaccctcgagaacgaggtgtcggccgagaagcgg
caggcggagaacgcgcgcgactccgagatcgagaagcgggccgccaagctggagcaggac
ctggccgagctcgaggccgagggtgcgaaggccgacgtgcgccgcaaggtcaaggaggcc
ggcgagcgcgagatgcggcagatgcgcgatcgcgcccagcgcgagatcgaccgtctcgac
gaggtcatggacacgttccgcaagctggagcgcaagaacctcatcaccgacgagctgctc
taccgcgagctgcgcgaccggttcggcgagtacttcaacggagccatgggcgctgaggcg
atcaaggctctgctggagaacctcgacctggaggacgaggccgagcagctgcgcgagacg
atccgcagcggcaagggccagcgcaagatccgtgcgctcaagcgcctcaaggtcgtggcc
gcgttcctcaacaccgccaactcgccgttgggcatggtgctggactgcgtcccggtcatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccgcttcgccaccagcgacctc
aacgacctgtaccggcgcgtcatcaaccggaacaaccggctcaagcgcctgatcgacctg
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggtcgtccggtcaccggcccgggcaaccggccgctgaag
tcgctgtccgacatgctcaagggcaagcagggccgcttccgtcagaacctgctgggcaag
cgcgtcgactactccggccgttcggttatcgtcgtcggtccgcagctcaagctgcaccag
tgcggcctgccgaagcagatggccctggagctgttcaagccgttcgtgatgaagcgcctg
gtggatctcaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgtcagcgc
ccggtcgtgtgggacgtgctggaggaggtcatcgcggagcacccggtgctgctcaaccgc
gcgccgaccctgcaccgcctgggcatccaggccttcgagccgcagctggtcgagggcaag
gcgatccagatccacccgctcgtctgcaccgccttcaacgccgacttcgacggcgaccag
atggccgtgcacgtgccgctgtccgcggaggcgcaggccgaggcccgcatcctcatgctg
tccagcaacaacatcctcaagccggccgacggcaagccggtcaccatgcccacccaggac
atggtcatcggcctgtaccacctctcgcacatccagaagaacctgctcggcgaggggcgg
accttcagctccgacgccgaggcgcggatggcgttcgacaacggcgagctgcacctgcag
gcgccggtgaagatccggctgcgggacatcatcggggtcgacaacggcgccggtgccgag
ccgtgggaggcgccggagggctggcagccgggtgagccggtgatcgtcgagacgacgctc
gggcgcgtgctgttcaacgaggcactgcccgtggggtaccgcttcgtgaactacgagatc
cgcaagggtcagctctcggcgatcgtcaacgacctcgccgagcgcttcccgaaggtctcc
ctcgcggcggccctcgacgcgctcaagctggccggcttccactgggccacctggtccggc
gtcaccatcggcatggaggacgtcatccagccgcctcgtaagcgcgagatcctcgagcgc
tacgagaaggaggccgagcggatcgacaagcagtaccagcgtggtctcatgaccgccgag
gagcgtcgcggcgagctcatcgagatctggaccaaggcgaccggcgaggtggccaaggag
atggagagcgcgctgccgcgcgaaaacccgctgtggaagatgatcaactcgggtgcccgc
ggtaacctcctccagctccgccagatcgccgcgatccgtggcctggtggccaacccgaag
ggcgagatcatcccgcggccgatcaaggccagctaccgggagggtctgtccgtgctggag
tacttcatctccacccacggtgcccgcaagggtctggccgacaccgcgctgcgtaccgcc
gactcgggttacctgacccgtcgtctggtcgatgtctcgcaggacgtcatcatccgcgag
gaggactgcggcaccgaccgcgccatcccgatggcggtcggcgagctggccgacggtgtg
ctgcgcatccaccagcacgcggagacgggtgtgcacgcgcgcaccctggccgacgacgtg
cgggacaaggacgggcggatcgtcgccgagcgcggcacggacatcaactcgatcgtcgtc
gacctgctcatcgcggccggcaccgagaacgtccgggtccgcagcgtgctcacctgcgag
tcgaagctgggcgtctgtggcgcctgctacggccggtcgctgcccacgggcaagaccgtc
gacgtcggcgaggcggtcggcatcatcgccgcccagtcgatcggtgagccgggcacgcag
ctgacgatgcgtaccttccacaccggtggcgtcgcgggtgaggacatcacccagggtctg
ccgcgtgtcacggaaatcttcgaggcccgcgtgccgaagggtaaggcgcccatcgccgac
acccccggtcgcgtgcgcatcgaggacggcgagcggatgcggaagatcatcatcgtgccg
gacgacggcagcgacgagatcgtccacgacaagctcagccgccgtgtcaagctgcgcatc
caggacggcgagcacgtcgaggtgggcgagaagctcaccgagggcaccatcgacccgcac
gagctgctgcgcatcatgggtccccgggcggtgcaggtgcacctcacgtccgaggtccag
gaggtgtaccgctcgcagggtgtgctcatccacgacaagcacatcgagatcatcatccgg
cagatgctcaagcgggtgacggtcatcgactccggctcgaccgagttcctgccgggcgtg
ctcgtcgaccgcgcgatgttcgaggcggagaaccgccgcgtcgtcgccgagggcggtgag
ccggccgctggtcgtccggtgctgatgggtatcaccaaggcgtcgctggcgacggagtcg
tggctgtccgcggcctcgttccaggagacgacccgggtgctgaccgacgccgcgatccac
gcgcgcagcgactcgctgatcggtctgaaggagaacgtcatcatcggtaagctcatcccg
gccggtacgggcatcagcaagtaccgcagcattcgggtcgagccgaccgaggaggcgaag
gccaaggtctactcgatgacgggctacccggaggccgactacggcttcgggcccgcgagt
ggccaggcggtcccgctcgacgacttcgatctgggctcgttccgctga
DBGET
integrated database retrieval system
