Desulfuromonas versatilis: DESUT3_00380
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Entry
DESUT3_00380 CDS
T07752
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dve
Desulfuromonas versatilis
Pathway
dve03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dve00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DESUT3_00380 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dve03400
]
DESUT3_00380 (mfd)
Enzymes [BR:
dve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DESUT3_00380 (mfd)
DNA repair and recombination proteins [BR:
dve03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DESUT3_00380 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
SNF2-rel_dom
RecG_dom3_C
AAA_22
AAA_16
UB2H
Motif
Other DBs
NCBI-ProteinID:
BCR02969
LinkDB
All DBs
Position
37029..40517
Genome browser
AA seq
1162 aa
AA seq
DB search
MQPEHPSAEIAHTTVRSFVEGVTAGPTRSEVLGLVGSAGAHLLAGLLGGSAETLLVLVPD
QKQAERLAADLDFFHGRPGEVFLFPHWEVRPYEALSPHPEVEATRLATLAALHEGRARAV
VAPVRALLQKIIPRPVLGGLCERLVVEDEYDRPALLARLLALGYGSVPLVEDRGTFSVRG
DLLDIFPPTRSQPVRIEFFGDYIERMRPFDAGSQRSSEQELEELVLLPAREMVLAGVHLE
TFAAQLKERCDALEIPRPRREAILEEAREGLMAPGRAFLLPLNYGGLDTLFDYAPRSSWV
VVDPPAVEAEADRFAAEVAEGEARARRQGEPYVAGAELFLGPSELEQQLALRRRIDLSSL
KVYRIEDQRPVFRVQAEGNGDIRSELRGEGGGLALLAERLKQWQSGGWKVLLVCHQRGQA
ERLLDLLEPHGLRPPFDPGGSLRLLRSGQALLVLGELSAGFRLPDEKLAVVTEEEIFGQR
VRRRGLTEARAQALLSSLAELKEGDFVVHADHGIGRYLGLLHLAMGPVEGDFLHLEYAGE
DKLYLPVDRIEKVQKYVGGEGHVPRLDKMGGSGWEKAKLKARAAVEELARELLKIYARRE
MSEGFAYSPSDRMFREFEAAFPYEETPDQLAAIEEVLADMESARPMDRLICGDVGYGKTE
VAIRAAFKAVLDGRQVAVLVPTTVLARQHLETFRERFKGSPVEIDMISRFRSAGEIRQAL
QRAAEGKVDVLVGTHRLLQRDVKFKDLGLVIVDEEQRFGVSHKEKLKKLRAEVDMLTLTA
TPIPRTLHMSMMGLRSLSVIDTPPVDRLAVRTYVTRFEDELIRDAILRELRRGGQVFFVH
NRVQSIGAMADFLKTLVPEAKVAVGHGQMGEKELEEVMVDFIDGRANVLVSTTIIENGLD
IPRANTIIINRADCFGLAQLYQLRGRVGRSSQRAYAYLLIPGEGILTREARERLRVLQEL
TELGAGFRVASHDLELRGAGDLLGGRQAGQIAAIGFEMYAELLEDTIQELKGLAREDKVD
PEIRLGLSAFLPEKYVPDPNQRLVFYKKLAAADHEEALYLAADELRDRYGEIPEPAELLL
EVMKLRVLMKRLRVELAEYDGRRLVFGFHARTPVPPDKILRLLEDPQKRYQFTPDYRLSI
QLGKLPGEELLGVAKKALQGFL
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgcaacctgaacacccttccgctgaaatcgcccatactacggtccgctccttcgtcgag
ggggtcacggccggtccgacccgcagcgaagtgctcggcctggtcggctcggcaggcgcc
cacctgctcgccgggctgctgggcggcagcgccgagaccctgctggtgctggtcccggac
cagaagcaagccgagcggctggccgccgatctcgacttcttccacggccgccccggcgag
gtctttctcttcccccactgggaggtgcgcccctacgaggctttaagcccccatcccgag
gtggaggcgacccgtctggccaccctggcggcgctgcacgaggggcgggcccgggcggtg
gtggcgccggtgcgcgccctgctgcagaagatcatcccccgcccggtgctgggcgggctc
tgcgagcggctggtggtggaggacgaatacgaccgcccggcgctgctcgccaggctgctg
gccctgggctacggctcggtgccgctggtggaggaccgcggcaccttctcggtgcgcggc
gacctcctcgacatctttccgccgacccgcagccagccggtgcgcatcgagtttttcggc
gactacatcgagcggatgcgccccttcgacgccggcagccagcgctcctccgagcaggag
ctggaggagctggtgctgctgcccgcccgtgaaatggtgctggccggggtgcatctggaa
accttcgccgcgcagctcaaggagcgctgcgatgccctggagatcccccgcccgcgccgc
gaagcgattctcgaggaggcccgcgaggggctgatggcgccggggcgcgcctttctcctg
ccgctcaactacggcgggctcgacaccctgttcgactatgcgccccggagcagctgggtg
gtggtcgaccccccggcggtggaggccgaggccgaccgcttcgccgccgaagtggccgag
ggcgaggcccgcgcccgccgccagggcgagccctatgtggccggcgccgagctgttcctt
gggccgtccgagctcgaacagcagctcgccctgcgccggcgtatcgacctgtcctcgctc
aaggtctaccgcatcgaggaccagcggccggtgttccgggtgcaggccgagggcaacggc
gacatccgctccgagctgcgcggcgaaggcgggggcctggccctgctcgccgaacggctc
aagcagtggcaatccggcggctggaaggtgctgctggtctgccaccagcgcggccaggcc
gagcgtctgctcgacctgctcgagccccacggcctgcgcccccccttcgacccgggcggc
tcgctccggctgctgcgctccggccaggccctgctggtgctcggcgaactctcggcgggc
ttccggctgccggatgagaagctggcggtggtcaccgaggaggagatcttcggccagcgc
gtgcgccgccgcggcctcaccgaggcccgcgcccaggccctgctctcctcgctggccgaa
ctcaaggagggggatttcgtggtccacgccgaccacggcatcggccgctacctggggctg
ctgcacctggccatgggcccggtggagggggatttcctgcacctggagtacgccggcgag
gacaagctctacctcccagtcgaccgcatcgagaaggtgcagaaatacgtcggcggcgaa
gggcacgtgccgcgcctcgacaagatgggcggcagcggctgggagaaggccaagctcaag
gcccgcgccgcggtggaggagctggcccgcgagctgctcaagatctacgccaggcgcgaa
atgagcgagggcttcgcctactcgccgtctgaccgcatgttccgcgagttcgaggccgcc
ttcccctacgaggagacccccgatcagctcgccgccatcgaggaggtgctcgccgacatg
gagtcggcgcggcccatggaccggctgatctgcggcgacgtcggctacggcaagaccgag
gtggcgatccgcgccgccttcaaggcggtgctcgacggccgtcaggtggcggtgctggtg
ccgaccacggtgctcgcccgccagcacctggagaccttccgcgagcgcttcaagggctcg
ccggtggagatcgacatgatctcgcgcttccgcagcgccggcgagatccgccaggccctg
cagcgcgccgccgagggcaaggtcgacgtcctggtcggcacccaccggctgctgcagcgc
gacgtcaagttcaaggacctcggcctggtgatcgtcgacgaggagcagcgcttcggggtc
agccacaaggagaagctcaagaagctgcgcgccgaggtcgacatgctgaccctcaccgcc
acccccatcccccgcaccctgcacatgagcatgatgggtctgcgcagcctctcggtcatc
gacaccccgccggtggaccggctggcggtgcgcacctacgtcacccgcttcgaggacgag
ctgatccgcgacgccatcctgcgcgagctgcgccgcggcgggcaggtcttcttcgtccac
aaccgggtgcagtccatcggcgccatggccgatttcctcaaaaccctggtccccgaggcc
aaggtcgcggtgggccacggccagatgggcgaaaaagagctcgaagaggtgatggtcgat
ttcattgacggccgcgccaacgtgctggtcagcaccaccatcatcgaaaacggcctcgac
atcccgcgggccaacaccatcatcatcaaccgcgccgactgcttcgggctcgcccagctc
taccagctgcgcggccgcgtcgggcgctccagccagcgggcctacgcctacctgctgatc
cccggcgaggggatcctcacccgcgaggcccgcgagcggctcagggtgctgcaggagctc
accgagctcggcgcaggcttccgggtggccagccacgacctcgagctgcgcggcgccggc
gacctgctcggcggacgccaggcggggcagatcgccgccatcggcttcgagatgtacgcc
gagctgctcgaggataccatccaggagctcaaggggctggcccgcgaggacaaggtcgac
cccgagatccgcctggggctttcggcctttctgcccgagaagtacgtccccgaccccaac
cagcgcctggtcttctacaagaagctggccgccgccgaccacgaggaggccctctacctg
gccgccgacgagctgcgcgaccgctacggcgagatccccgaaccggccgagctgctgctc
gaggtgatgaagctgcgggtgctgatgaagcggctgcgggtcgagctggccgagtacgac
ggccgccggctggtgttcggctttcacgcccgcactccggtgccgccggataaaatcctg
cgcctgctggaagacccgcagaagcgctaccagttcacccccgactaccggctctccatc
caattgggcaaactgcccggcgaggagcttctcggggtcgccaaaaaagcgttgcagggc
tttctctag
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