Desulfuromonas versatilis: DESUT3_39560
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Entry
DESUT3_39560 CDS
T07752
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dve
Desulfuromonas versatilis
Brite
KEGG Orthology (KO) [BR:
dve00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dve03016
]
DESUT3_39560 (rtcB)
Enzymes [BR:
dve01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DESUT3_39560 (rtcB)
Transfer RNA biogenesis [BR:
dve03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DESUT3_39560 (rtcB)
Prokaryotic type
tRNA splicing ligases
DESUT3_39560 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BCR06887
UniProt:
A0ABN6E3R6
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All DBs
Position
4471751..4473193
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AA seq
480 aa
AA seq
DB search
MSVKVEQIDACRWRLPREGAMRTDGLVFASRQMMAFLQQEQALEQVRNVATLPGIVGPSI
GMPDIHWGYGFPIGGVAAFDADEGVVSPGGVGYDINCGVRLLRTDLEVSEVRPHLKQLAD
ALYRNVPSGVGSHRKDLKLSVEQERKVLVRGARWAVEQGFGRPEDLEHIEEQGTIAGADP
ELVSDRALERGRNQLGTLGSGNHFLEVDLVEEIGDEQAAAALGLFSGQVVVTIHTGSRGF
GYQVCDDYLRTMLHAARKYGIELPDRQLCCAPLSSPEGKQYLAAMACAANFAFTNRQLIT
AWVRESFEQVLGKGPAELRMSLIYDVCHNIAKWETHQFEGKKRRLCVHRKGATRAFPPGH
PDTPAAYRHVGQPVLIPGDMGRYSYVLVGTQGAFEETFGSTCHGAGRVLSRHAAKKQARG
HNVEAELAAQGIHIRAASRATVAEEIPEAYKDVMEVVGVVQQAGIGKIVARLKPLAVIKG
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgaaagtggaacagatcgacgcctgccgctggcgccttccccgcgaaggggcc
atgcgcaccgacgggctggtcttcgccagccgccagatgatggccttcctgcagcaggag
caggccctcgagcaggtgcgcaacgtcgctaccctgccgggcatcgtcggcccgtccatc
ggcatgcccgacatccactggggctacggttttcccatcggcggggtggccgccttcgac
gccgacgagggggtggtttcccccggcggggtcggctacgacatcaactgcggcgtgcgc
ctgctgcgcaccgatctcgaggtcagcgaagtccgccctcatctcaagcagctggcagac
gctctgtaccgcaacgtcccctcgggggtcggctcgcaccgcaaggacctcaagctcagc
gtcgagcaggagcgcaaggtgctggtccgcggcgcccgctgggcggtggagcagggcttc
ggccgccccgaggacctggagcacatcgaggagcaggggaccatcgccggcgccgacccc
gagctcgtctccgaccgggccctggagcggggccgcaaccaactcggcaccctgggctca
ggcaaccattttctcgaggtcgacctggtggaggagatcggcgatgagcaggcggccgcc
gccctcggcctgttttccggccaggtggtggtcaccatccacaccggcagccgcggcttc
ggctaccaggtctgcgacgactacctgcgcaccatgctgcacgcggcgcgcaagtacggc
atcgagctgcccgaccggcagctgtgctgcgccccgctgagcagccccgagggcaagcag
tacctggccgccatggcctgcgccgccaacttcgccttcaccaaccgccagctgatcacc
gcctgggtgcgcgagagcttcgagcaggtgctcggcaagggcccggccgagctgcgcatg
tcgctgatctacgatgtctgccacaatatcgccaagtgggagacccaccagttcgagggg
aaaaaacggcggctctgcgttcaccgcaagggggccacccgcgccttcccgcccggccac
cccgacaccccggccgcctaccggcacgtcggccagccggtgctgatccccggcgacatg
gggcgctattcctacgtgctggtcggcacccagggcgccttcgaggagaccttcggctcg
acctgccacggcgccgggcgggtgctcagccgccacgccgccaagaagcaggcccgcggc
cacaacgtcgaggccgaactggccgcccaggggatccatatccgcgccgcctcgcgggcc
accgtggccgaggagatccccgaggcctacaaggacgtcatggaggtggtcggggtggtg
cagcaggccggcatcggcaagatcgtcgcccgcctcaagccgctggcggtgatcaagggg
tag
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