Nitratidesulfovibrio vulgaris RCH1: Deval_0180
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Entry
Deval_0180 CDS
T02064
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
dvg
Nitratidesulfovibrio vulgaris RCH1
Pathway
dvg03420
Nucleotide excision repair
dvg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Deval_0180
03430 Mismatch repair
Deval_0180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dvg03400
]
Deval_0180
Enzymes [BR:
dvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Deval_0180
DNA repair and recombination proteins [BR:
dvg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Deval_0180
MMR (mismatch excision repair)
Other MMR factors
Deval_0180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
DEAD
AAA_12
PAH
AAA_11
Sde2_N_Ubi_yeast
Motif
Other DBs
NCBI-ProteinID:
ADP85351
LinkDB
All DBs
Position
234193..236352
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AA seq
719 aa
AA seq
DB search
MIEFAKELNAAQYEAVTTLDGPVLVIAGAGSGKTRTVVYRLANLLERGVPASSILLLTFT
RKAANEMLQRASRLLGYGVQGIAGGTFHAFAYSLLRQYHPARLEGRDLTIMDGADSVAAI
QHCKDALGIARGDKSFPKTQTVLSLLSKSRNKELPLDEVLRREAYHLLVHADGVSRIGEA
YAEYRAEHGLLDYDDLLFEVERLLRERPDLLAHLRDRYRYIMVDEYQDTNLVQARLVQLL
AGEGGNVMAVGDDAQSIYAFRGANVQNILSFPQFFPGTRIIKLEENYRSTQPVLDLTNAI
LAEAPQAYRKHLYTSREDGVLPQVVRPLSDLTQASIVVSRVSELLRTYPPHEIAVLFRAG
FHSYHVEVQLNKLGIRFRKYGGVRYSEAAHVKDVMAYARLVLNPLDLPAFQRVAALSRGV
GPKTTLRLYEVARQGDPAATAHACARYPQLRADLELLDRLRKRTPAPATLLEEVIEHYQP
RLEAAYPDDWPRRQQGLEQLVQIASAYRDLDLFISDLSLEDPGTEEEDRDSVVLSTIHSA
KGLEWSAVIILDLVEDRFPSRHAVTRADDFEEERRLMYVACTRARERLMLFVPSSLYQRG
EGGNQPAAPSPFVRELPAALYEEWYESYTGGLQRRDTSRPVARPAVASTFGCAPRPESAP
VPGGPSPVAGAAKLGFCTHKIFGRGKIVQHLPPDKYRVNFPGVGLKVILGDYLTLEDDA
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgatagaattcgccaaagaactcaacgcggcccagtatgaggccgtgaccacgctcgac
ggcccggtgctggtcatcgccggtgcgggcagcggcaagacgcgcacggtggtctaccgc
ctcgccaacctgcttgagcgcggcgtgcccgcctcgtccatcctgctgctgacgttcacc
cgcaaggcggccaacgagatgctgcaacgcgccagccgcctgctgggctacggggtgcag
ggcatcgccgggggcaccttccacgccttcgcctattcgctcttgcgccagtaccatccg
gcacgccttgaggggcgcgacctgaccatcatggacggggccgacagcgtggccgccatc
cagcactgcaaggatgcgctcggcatcgcgcggggggacaagtcgttccccaagacacag
acggtgctgtcgttgctcagcaagtcgcgcaacaaggaactgccgctggacgaagtgctg
cgccgcgaggcgtaccacctgctggtacatgcagacggggtctcgcgcatcggcgaagcc
tacgccgaatatcgcgcggaacacggcctgctggactatgacgacctgctcttcgaggtg
gagcgcctgttgcgcgaacggcccgacctgctggcccacctgcgcgacagataccgctac
atcatggtcgacgagtatcaggacaccaacctcgtgcaggcgcggctggtgcagcttctg
gcgggagagggcggcaacgtcatggccgtgggggacgacgcccagtccatctacgccttt
cgcggcgccaacgtgcagaacatcctgtcgttcccgcagttctttcccggtacgcgcatc
atcaagctggaagagaactaccgttccacccagccggtgctcgacctcaccaacgccatc
ctcgccgaggcaccgcaggcctaccgcaagcacctgtacaccagtcgcgaggacggcgtg
ctgccgcaggtggtgcgacccctgagcgacctcacgcaggcatccatcgtggtgagtcgc
gtgagtgaactgctgcggacgtatccgccccatgaaatcgccgtgctgttccgggcgggg
ttccactcgtaccatgtggaggtacagctcaacaaactgggcatccgcttccgcaagtat
ggcggggtgcgctattccgaggccgcgcacgtcaaggacgtgatggcctacgcccgcctt
gtgctcaaccccctcgacctgccggcgttccagcgtgtggcggccctgtcgcgcggtgtg
gggcccaagaccaccctgcgcctctacgaggtcgcccgacagggtgacccggcggcgacg
gcccatgcctgcgcgcgttatccgcaactgcgggccgaccttgaactgctcgacaggctt
cgcaagcgcacacctgcgcccgccacgctgctggaagaggtcatcgagcattaccagccg
cgtctcgaagccgcctaccccgacgactggccgcgcagacagcagggacttgaacagctt
gtgcagatagcctcggcctatcgcgacctcgacctcttcatctccgacctgtcgctggaa
gaccccggcaccgaggaggaggaccgcgacagcgtggtgctgtccaccatccattccgcc
aaggggcttgagtggagtgccgtcatcatcctcgacctcgtggaggacaggttcccgtcg
cgccatgccgtgacgcgcgccgacgacttcgaggaggagcgccgcctgatgtacgtggcc
tgcacccgcgcccgcgaacggctcatgctcttcgtgccgtccagcctctaccagcgcggg
gagggtggcaaccagcccgccgcgcccagccccttcgtccgggagttgcccgcggcactg
tacgaggagtggtacgagagctataccggaggtctgcaacggcgtgatacgtcgcgtccg
gttgcgcgtccggccgtggcatccaccttcggttgcgcaccgcgtcccgaatcggcaccg
gtgcccggcgggccgtcgcccgttgcaggggcggcgaagctggggttctgcacgcacaag
atcttcgggcggggcaagatcgtccagcatctgccgcccgacaagtacagggtgaacttc
cccggcgtggggctcaaggtcatcctgggcgactatctgacgctggaggatgacgcatga
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