Nitratidesulfovibrio vulgaris RCH1: Deval_0405
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Entry
Deval_0405 CDS
T02064
Name
(GenBank) Exonuclease RNase T and DNA polymerase III
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
dvg
Nitratidesulfovibrio vulgaris RCH1
Pathway
dvg03030
DNA replication
dvg03430
Mismatch repair
dvg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Deval_0405
03430 Mismatch repair
Deval_0405
03440 Homologous recombination
Deval_0405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dvg03032
]
Deval_0405
03400 DNA repair and recombination proteins [BR:
dvg03400
]
Deval_0405
Enzymes [BR:
dvg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Deval_0405
DNA replication proteins [BR:
dvg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Deval_0405
DNA repair and recombination proteins [BR:
dvg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Deval_0405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
CAF1
Motif
Other DBs
NCBI-ProteinID:
ADP85576
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All DBs
Position
complement(505761..506516)
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AA seq
251 aa
AA seq
DB search
MTRPEGTMHKARRVASRLLDGLTRLPLLHTPWSGEAERLRQPVHAATFVVLDLEMTGLVP
RRDAIIAVAGVTMRGERILAGRCFEAKMRPHLPPEEDAIAVHGLLPDETATHDDPAESLA
AFRTFCGDSVPAGWHVGLDAAFLDAAAQRHGVRPWPRRTLDVRGLHLALRHRLPARAAAL
ATKDADLYAVARVFDIDVADAHDATGDAWLTALVLQRLLVHGDCGHMTLGDLFHLAATGL
HELNGATAMTF
NT seq
756 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgccctgaaggcaccatgcacaaggcgagacgcgtcgcttcacgcctgctggac
ggactgacgcggctgccgctgctgcacaccccgtggtcgggagaggctgaacggctgcgg
caacccgtccacgccgcaacgttcgtggtactcgaccttgagatgacggggcttgtgccg
cgccgcgacgccatcatcgccgtggctggcgtgaccatgcgcggtgagcgcatcctcgcc
ggacgctgcttcgaggcgaagatgcgcccgcatctgcccccggaagaggatgccatcgcc
gtgcacggtctcctgcccgacgagacagccacccacgacgacccggcggaatcccttgcc
gcctttcgcaccttctgtggagacagcgtgcccgcggggtggcatgtgggcctcgatgcc
gcattcctcgatgccgcggcgcaacgccacggggtgcgcccgtggccccgccgcaccctc
gacgtgcgaggcctgcaccttgccctgcgccacaggctgcccgcccgcgccgcagccctc
gccacgaaggacgccgacctctacgccgtggcacgcgtgttcgacatcgatgtggctgac
gcacacgacgccacaggcgacgcatggctcaccgccctcgtgctgcaacgccttctggtt
catggcgactgcggccacatgacgcttggcgacctcttccaccttgccgccacgggactg
catgaactgaacggtgccacggccatgacgttctag
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