Nitratidesulfovibrio vulgaris RCH1: Deval_1594
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Entry
Deval_1594 CDS
T02064
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
dvg
Nitratidesulfovibrio vulgaris RCH1
Pathway
dvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Deval_1594
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvg03019
]
Deval_1594
Messenger RNA biogenesis [BR:
dvg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Deval_1594
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B
Lactamase_B_3
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ADP86748
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Position
complement(1807647..1808894)
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AA seq
415 aa
AA seq
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MEITIHRGTQEIGGSCVQLSSGGRSILIDAGSPLRESQCEVKLSDISFEAVLVSHPHQDH
YGLIDSLDPATPVYIGEIACKMIAAARTFTSRPPLANNFRHFKAWTQFEIGPFRITPYLM
DHSSTDAFGFLVEAEGKRLFYSGDFRAHGSKEKTFDALLARPPQKVDVLLMEGTMLGRES
AAYRREKNIENEMLEVLSEEKGPAFLICSGQHVDRLCAAFRACRKAGRIYVVDIYTAWIL
QILSEHFDTTPHFRLKDIRVLAHGPTAKNHYMAIKNNAKFTRFIREIYKTDTAIKESQIA
ESPSRYFIKNTRIDHLLNALNPPQCSLIYSQWSGYLESQYNPQSWKLTNLRDDPRVSFHE
IHTSGHAFRQDLKRYANAINPKLLVPIHTEKKQDYAKHFQPIQVKAVADGELFEV
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggaaataaccatccaccgtggaacgcaagaaatcggcggaagctgtgtgcagctttct
tcagggggccgatcaatattgattgatgctggctcccccctcagagaaagccaatgcgag
gtcaagctttctgatatcagctttgaagcagtgttggtgagccacccgcatcaggatcat
tacggactgatcgacagccttgatcctgccacgccggtctatattggcgaaatcgcctgt
aagatgattgccgcagccagaacctttacgtccagacctccccttgcaaacaacttcagg
catttcaaggcatggacccagtttgaaataggccctttccgtatcactccgtatctgatg
gatcattcatctaccgacgcctttggctttctggtcgaagccgaaggtaaaagacttttc
tacagcggagatttcagagcgcatggcagcaaagaaaaaacattcgatgcccttcttgca
agaccccctcaaaaggtcgatgtattgctgatggaaggcaccatgctgggccgtgaaagt
gcagcatacaggcgggaaaaaaatattgaaaacgaaatgctagaggtactgagcgaagaa
aaaggaccagcttttctgatttgttcaggacaacatgttgatcgtttgtgtgccgccttc
agagcatgtagaaaagctgggcgaatctatgtcgttgacatctatacagcctggattctg
caaattctatccgagcacttcgacacgacacctcacttccgcctgaaagacatccgcgta
ttggcgcatggccccaccgcaaaaaaccactacatggccatcaagaacaacgcaaagttc
acaagattcatacgggaaatctacaaaaccgatacggccattaaagagtctcaaatcgcc
gaatccccaagccgctatttcatcaaaaatactcggattgatcatttgctgaatgcgcta
aatccaccacagtgcagtctcatatattcacaatggagtggatatcttgaaagccaatac
aaccctcaaagctggaaactgacgaatctcagagatgacccgagagtctcattccatgaa
atccacaccagtggacatgctttccggcaagaccttaagcgttatgccaacgcaattaac
ccaaagcttctggtgccgattcatacagaaaaaaaacaagactatgcaaagcacttccag
cccattcaggtgaaggccgttgcagacggcgagttgtttgaagtttga
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