Nitratidesulfovibrio vulgaris RCH1: Deval_2852
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Entry
Deval_2852 CDS
T02064
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dvg
Nitratidesulfovibrio vulgaris RCH1
Pathway
dvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Deval_2852
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvg03019
]
Deval_2852
03009 Ribosome biogenesis [BR:
dvg03009
]
Deval_2852
Enzymes [BR:
dvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Deval_2852
Messenger RNA biogenesis [BR:
dvg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Deval_2852
Ribosome biogenesis [BR:
dvg03009
]
Prokaryotic type
rRNA helicases
Deval_2852
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
ADP87994
LinkDB
All DBs
Position
3233032..3234765
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AA seq
577 aa
AA seq
DB search
MTQEPNMPEDAVAPEEDRAARVAAEITGIDEPEDALPSVQFADLAPRLQEACIRAGWQSL
MPVQAHALPYLFDGRDLMVQSRTGSGKTGAFLLPLLERLDPAEASTQALVLVPTRELALQ
VEHEARTLFEGTGLRVAAVYGGVGYGKQNDALREGAHFVVGTPGRVLDHLLRRTMQLDRL
RALTFDEADRMLSIGFYPDMKEIQRYLPKRRIATCLFSATYPPHVLNLAGEFLREPQMLS
LSHSQVHVAQTQHMFCESKPMDKDRALIRLLEIENPSSAIIFCNTKANVHYITAVLQGFG
YNADELSADLSQSKREQVLERLRNNEVRFLVATDVAARGIDIPALSHVILYEPPEDRESY
IHRAGRTGRAGAVGTVISLVDIMQKLELQRIARHYRMDIAHRPTPQDEDVARVVGDRLTA
LLEGAYRQCTGLQRERIQRFTDVARTLAADEEQVVLLAMLLDEKYQQSLHAMPPRPRPQR
ASASRAVDSESDTAPRRRSRGRRDDEGSTGGDERKTAPRTAPSRTTAGAEGASAHEDTGA
GNMQTAQDGDEQRTPRKRRRPRRRKPTGGDNGTSHDA
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagaaccgaacatgcccgaagacgccgtcgcgcccgaagaagacagggccgcg
cgcgtcgcggcagagataaccggtatcgacgagcccgaagacgccctgccttcagtacag
tttgccgacctcgcgccgcggctgcaggaggcctgcatccgcgcgggctggcagagtctc
atgcccgttcaggcccacgccctgccctatctcttcgacggacgcgacctcatggtgcag
tcgcgcaccggcagcggcaagacaggggcctttctgcttccccttctcgaacgtctcgac
cccgccgaagcctccacacaggcactggtgctggtgcccacccgcgaactcgcccttcag
gtcgaacacgaggcccgcaccctcttcgagggcacgggactgcgcgttgccgccgtctat
ggcggcgtcggctacggcaaacagaatgacgcactgcgcgaaggcgcccacttcgtggtc
ggcacaccgggtcgcgtactcgaccacctgctgcgtcgtaccatgcagctggacaggctg
cgcgccctgacgttcgacgaagccgacaggatgctctccatcggcttctatcctgacatg
aaggagatacagcggtacctgcccaagcggcgcatcgccacctgcctgttctccgccacg
tacccgccgcacgtcctgaaccttgccggtgagttcctgcgcgaaccgcagatgctgagc
ctcagccactcgcaggtgcatgtggcgcagacgcagcacatgttctgcgaatcgaagccg
atggacaaggacagggccctcatccgcctgctggagatagagaatccctcttccgccatc
atcttctgcaacaccaaggccaacgtccactacatcacggcggtgcttcagggcttcggc
tacaacgccgatgagctttcggcagacctttcgcagtcgaagcgcgagcaggtgctcgaa
cgccttcgcaacaacgaggtgcgcttcctcgtggcgacagatgtagcggcgcgcggcatc
gacatacccgccctttcgcacgtcatcctctacgaaccgcccgaagaccgcgaatcatac
atccaccgtgccggtcgcacgggtcgcgcgggtgccgtgggcacggtcatatccctcgtc
gacatcatgcagaagctcgaactgcaacgcatcgcacggcattaccgcatggacatcgcc
catcggcccacgccgcaggacgaggacgtggcgcgcgtggtgggcgacaggctgacagcc
ctccttgaaggggcctaccgccagtgcaccgggttgcagcgtgagcgcatccagcgcttc
accgacgtggcacgcaccctcgccgccgacgaggagcaggtcgtgctgctcgccatgctg
cttgacgagaagtaccagcagagcctccacgccatgccaccgcgccccagaccgcagcgt
gcatcggcaagccgcgccgttgacagcgaaagcgatacggccccaagacgccgcagcagg
ggcaggagagacgacgaaggcagcaccggaggcgacgagcggaaaaccgcgccccggacg
gcaccctcccgcaccacggcaggggcagagggcgcatccgcccacgaggacaccggtgca
ggcaacatgcagaccgcacaggatggcgacgaacagcgcacgccccgcaaacggcggcgt
ccgcgcaggcgcaagcctaccggtggcgacaacggcacctcccatgacgcctga
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