Nitratidesulfovibrio vulgaris RCH1: Deval_2965
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Entry
Deval_2965 CDS
T02064
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dvg
Nitratidesulfovibrio vulgaris RCH1
Brite
KEGG Orthology (KO) [BR:
dvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dvg03016
]
Deval_2965
Enzymes [BR:
dvg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Deval_2965
Transfer RNA biogenesis [BR:
dvg03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Deval_2965
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GFIT
Motif
Pfam:
RNB
Phage_zn_bind_8
Motif
Other DBs
NCBI-ProteinID:
ADP88107
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All DBs
Position
3375186..3377282
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AA seq
698 aa
AA seq
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MATPSGIVRFPGAGCVVEFMQGNRPQIAWVMEEQGGRLRLFLPNRRETKLAAARLLPWAG
PRYDGERSRDDMVALLEEHRQRRDTREADIQPLELWEMVQGEVEQASVEWFAELLGETPG
VDEVAAMGRALLGCKTHFKFHPPDFEVYDAAKVEARMVEMEAARVREALVEAGQAFIKVL
WDVHCRRRTMPLPSSSEMPPAEVAERLATLLRTRMADPDDHDSDSVWKQVTKGLPDDAHM
PLHLAAAWGIVPVHHNFWMDRAGYAPGDEWAIDHVDEIDALMKRVEALREPLVDGTFISI
DSSTTRDIDDAFDISPSPEGGWILRLVLASPVTGWDFDGPLDRAVLRRATSIYLPERSHH
MMPETLGTDAYSLLAGQDRPALLVTFDIAPDGSLRSTTPATGWVRLAANLTYTECEACLT
GEGDAGRAAPHADRLALADALARVRQQLRVAAGAVIIERDDPKVTLEGEGCAVKVHVAPP
DETPRAQLLVSEMMILANAAIASWGAERGITLLHRTQDVGIPREYAGVWNQPHDIARVVK
ALAPAHLEPVAKPHAGIAVPAYSPVTSPLRRYPDLVNEAQVIHYLTHGTPRWSREEVEAM
LPLLGARLDAAGQVQRFRPRYWKLFYIRQQGDKAWHEAVVTEENDAFVTISLPEVQIFVR
GRRSTFGDKVYPGQHFNVRLGKVHPLNNEIQIVDAMEG
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaccttcgggcatcgtgcgttttcccggcgctggctgcgtcgtggagttcatg
cagggcaaccgcccccagatagcgtgggtcatggaggaacagggcggccgcctgcgcctg
ttcctgcccaaccggcgcgagacgaagctcgccgcggcgaggcttctgccatgggcaggg
ccgcgttacgatggcgaacgctcgcgtgacgacatggtggcgctgctcgaagagcaccgc
cagcggcgcgacacccgcgaagccgacatccagcccctcgaattgtgggagatggtacag
ggcgaagtggaacaggcgtccgtggaatggttcgccgaacttctgggcgagactccgggc
gtcgacgaggtggccgccatgggccgggcactgctcggttgcaagacgcacttcaagttc
cacccgccggacttcgaggtctacgacgccgccaaggtcgaagcgcgcatggtcgagatg
gaggccgcgcgagtgcgtgaagccctcgtcgaagccggacaggccttcatcaaggtgctg
tgggacgtgcattgccgccgccgcaccatgccgctgccctcgtcttccgagatgcccccc
gccgaagtggcggaacgtctcgccacgctgctgcgcactcgcatggccgacccagacgac
catgacagcgattcggtctggaagcaggtcaccaagggcctgcccgacgacgcgcacatg
ccgctgcaccttgccgccgcatggggcatcgtgccagtccaccacaacttctggatggac
agggcaggctatgcccccggcgacgagtgggccatcgaccacgtggacgaaatcgacgca
ctcatgaagcgcgtcgaagcgctgcgcgaaccactcgtggacggcacgttcatcagcatc
gactcgtccaccacccgcgacatcgacgacgccttcgacatctcgccctctcccgaggga
gggtggatactgcgcctcgtgctggcgtcgcccgtcacagggtgggacttcgacgggccg
ctggacagggccgtcctgcgccgtgccaccagcatctacctgcccgaaaggtcgcatcac
atgatgccggagacgctggggacagacgcctacagccttctcgcaggtcaggacagaccc
gcactgctggtcaccttcgacatcgcgcccgacgggtcactccgttccaccacccccgcc
accgggtgggtgcgcctcgccgccaacctcacctacaccgaatgtgaggcatgcctcacc
ggagagggcgatgcaggtcgcgccgccccgcacgccgaccgcctcgcgctggcggatgcg
ctggcgagagtgcggcagcagttgcgcgtggctgccggtgccgtgatcatcgaacgcgac
gaccccaaggtcaccctcgaaggcgagggctgcgccgtgaaggtgcatgtggccccgccc
gacgagaccccgcgcgcgcagcttctcgtctcggagatgatgatccttgccaacgccgcc
atcgcctcatggggtgcggaacgtggcatcactctcctccaccgcacgcaggacgtgggc
atcccgcgcgaatatgccggggtatggaaccagccgcacgacatcgcacgggtggtcaag
gcactggcccctgcccacctcgaacccgttgccaagccccacgcgggtatcgccgtgccc
gcctacagtcccgtgacctcgccgttgcggcgctaccccgaccttgtcaacgaggcgcag
gtcatccattatctgacccacggcaccccgcgctggtcgcgtgaagaggtggaggccatg
ctgccgcttctcggtgcgcgtcttgatgccgcggggcaggtgcaacgcttccgcccccgc
tactggaagctcttctacatccggcagcagggtgacaaggcatggcacgaggccgtggtc
accgaagagaacgacgccttcgtcaccatcagcctgcctgaagtgcagattttcgtgcgg
ggcagacggtccaccttcggcgacaaggtctatccgggccagcatttcaatgtacgactc
ggcaaggtgcatccgctcaacaacgagattcagatagtggacgccatggaaggctag
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