Nitratidesulfovibrio vulgaris RCH1: Deval_3059
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Entry
Deval_3059 CDS
T02064
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dvg
Nitratidesulfovibrio vulgaris RCH1
Pathway
dvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Deval_3059
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvg03019
]
Deval_3059
03009 Ribosome biogenesis [BR:
dvg03009
]
Deval_3059
Enzymes [BR:
dvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Deval_3059
Messenger RNA biogenesis [BR:
dvg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Deval_3059
Ribosome biogenesis [BR:
dvg03009
]
Prokaryotic type
rRNA helicases
Deval_3059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
DNA_pol3_gamma3
Motif
Other DBs
NCBI-ProteinID:
ADP88200
LinkDB
All DBs
Position
3489740..3491338
Genome browser
AA seq
532 aa
AA seq
DB search
MESVESFKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFG
LPLLQRIDAADRSVQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASA
LRRGAQVVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWV
QSAFFSATMPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFRRVDAVCRIFD
AYIPRKAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISVLVA
TDVAARGLDVDDVDTVINFDLPNDPETYVHRIGRTGRAGRTGRAFSFAAGRDVYKLRDIQ
RVTGSRIDRRAMPTAADASRARTGQLLEEVAAGLASAETSACLPVVEKLIAEGADPTQLA
ATLLRMIMQRDRIDLPGARQTDDIGTGRVRLFFNVGRRMRITPRDLVGAIAGETGISGRS
IGSIEIHDRFSFVEVDASIAPEVVSVMHGNQIRGFRLAVEQASPREGQDRAA
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atggaatccgtagaatcgttcaaggacctccccctcgaagaggaactgctcaaggccatc
gaagaactcggcttcaccgagccctcgcccatccagtccatcgccatcccccgcctgctt
gaaggccgcgacgtgataggtcaggcccagaccggcaccggcaagaccgccgccttcggt
ctgcccctgcttcagcgcatcgacgccgccgaccgctcggtacaggccctcgtgctctgt
cccacccgtgaactggccctgcaggtggccaatggcctcaccgccctcgccaagcatctg
cgcggggtacgcatcctctccgtgtacggcggccagcccatcgaaccgcaggcctccgcc
ctgcgccgtggcgcacaggtcgtcgtgggtacgcccgggcgcatcctcgaccatatcaac
cgcggcaccctgcaactcggcgtcgtgcgcatgaccgtgctcgacgaagccgacgaaatg
ctcgacatgggctttcgcgaggacatcgaacgcatcctcagcgaaatgcccgaatgggtg
cagtctgcgttcttctccgccaccatgcccgacggcatcctcgaactcgcccgccgcttc
ctgcgcgaacccgagttgctgcgcgtgacgcgccgccagcttaccgtcgccaatacggaa
caggcatggttcgaagtgcggcccttccgccgcgtggacgccgtatgccgaattttcgac
gcctacattccgcgcaaggccatcgtcttccgcgccaccaagcagggcgtcgatgaactg
gccgccgcactccagcagcgcggcatcctcgccgacgccctgcacggcgacctcaaccag
acccagcgcgaacgtgtcatgtcccgcttccgcgccgggggcatctccgtgctggtcgcc
accgacgtggcagcccgtggtctggacgttgacgacgtggacaccgtcatcaacttcgac
ctgcccaacgaccccgagacctacgtgcaccgcataggccgcactggccgtgcaggccgc
accggcagggccttctcgttcgccgcaggtcgcgacgtgtacaagttgcgcgacatccag
cgcgtgaccgggtcgcgcatcgaccgccgcgccatgcccaccgccgccgacgcctcccgc
gcccgcaccgggcagttgcttgaggaagtcgccgccgggcttgccagcgccgagacctcg
gcctgcctgcctgtggtggagaagctcatcgccgaaggcgccgacccgacccagcttgcc
gccacgctgctgcgcatgatcatgcagcgcgaccgcatcgacctgccgggtgcccgccag
accgatgacatcggcaccgggcgcgtgcgcctgttcttcaacgtggggcgccgtatgcgc
atcaccccgcgtgacctcgtgggcgccatcgccggtgagacgggcatctccggccgttcc
atcggttccatcgaaatccacgaccgcttctcgttcgtggaagtggatgcctccatcgcc
cccgaagtggtgtcggtgatgcacggcaaccagattcgcggcttccgcctcgccgtggaa
caggcaagcccccgtgagggtcaggaccgcgccgcttaa
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