Drosophila virilis: 6623428
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Entry
6623428 CDS
T01066
Symbol
Msh6
Name
(RefSeq) probable DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
dvi
Drosophila virilis
Pathway
dvi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
6623428 (Msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dvi03400
]
6623428 (Msh6)
DNA repair and recombination proteins [BR:
dvi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
6623428 (Msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
HEAT_EF3_N
Motif
Other DBs
NCBI-GeneID:
6623428
NCBI-ProteinID:
XP_002048220
UniProt:
B4LGU7
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All DBs
Position
3:complement(22118050..22122262)
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AA seq
1192 aa
AA seq
DB search
MSKKLNTSAGGTPKNTLFNYFAKSPAVDKKKLTPSNGGDSELQKENLQNGSLKNVKKDAK
PAAKRKLVTSGSPDSEKEQEKGQRKRKRIIVPESESEEEYESKSEPDFSDDGSEYEPDGK
DATISEESESGDEEAEPSELETDDDPTPKKQRTKASKNHINNNNNDEPASKKAKLDAPVL
AAGGTFMEKLQQLQSNAKKDAAYDEIVTTTSNMDEPVVWPHQKLDFLQPDKIKDKAGRRP
DHPDYDKSTLHVPEKFLNGLSPGVRQWWILKSDNFDCVLFFKVGKFYELYHGDADVGVNE
LGFTYMRGEFAHSGFPEISFDKMSSILIDRGYKVARVEQTETPDMMTERCKRIKATKFDK
VVAREICQITDRGTQVFGSQCAIGPNHQPNYMLAIVEQDAGTSSKYGICFIDTSIGDFHV
GEFDDDKSCSRLLTLISHHMPVLLLHEKSALSSRTQQILRTVLGGILKEQLPSAGNQVCS
AEKTLKLLAERYYAGNGTEDNWPLVLRTMQSDTDHLGLTPADPYKLALKALGQCIHYIAK
CKLEPKVLPMARYQLYVPPDQEQEANTKQPLAATLRRSHMVLDATTLSNLRIVGEEHSLL
STLDHCCTKFGKRLLHHWLCAPSCDLIVLRERQEAIGELLRQPDELQQLRALLAPMPDFE
RHLAQIHLFGSKRIAQTEHPDSRAILFEEKLYNKQKLRSFMSILKGFETLMKLPVMFQTC
ETKLMQRLTQLPPNGGSYPDLSKQLKFFENAFDHEAADKTGVIAPQPGVDADYDEVQQRI
ADVQERLKIYLTEQERHFGCRVVYFGSDKKRYQLEVPESHAHKANKSYALEGQVKGKKAA
RRYTTAETKALLKDMQQAEEARNAVLKDLARRLFEKFSNHYQQWKQCIDCVATLDVLAAL
AEYARQQLVICVPELVSAQQAQPFIELEEGYHPCANPSTYIPNGLQLGTNSEAPLSLLTG
PNMGGKSTLMRQVGLLVIMAQIGAHIPAVSCRLSLVDRIFTRLGAQDDILAGHSTFLVEL
NETSLILKHATCNSLVLLDELGRGTATYDGTAIAASVVNFLANLKCRTLFSTHYHNLIDF
FHTDKRITLGHMACMVENEDNTDPTQETVTFLYKYTAGACPKSYGFNAAKLAGMPHGIIK
RAYELSKKVEAIALQRKITAKIVAAAAGDVNKKTDKLNNLKDLLQQLKMCHV
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagaaactaaatactagcgctggtggcacgccaaaaaacactctatttaactac
tttgccaaatcgccagcagttgacaaaaagaaactcacgcccagcaacggcggtgacagc
gagctgcaaaaggagaacttgcagaatgggagtctgaagaatgtgaaaaaggacgccaag
ccggctgccaaacgcaagttggtaacttcaggcagccctgacagtgagaaggagcaggag
aaaggccaacgtaagcgaaaacgtattatagtgcccgaatcagagagcgaagaagaatac
gaatccaaatcggagccggacttttccgatgatggctccgagtatgagccagatggcaag
gatgccaccatcagtgaggagagcgaaagtggcgacgaggaggcggagcccagcgagttg
gaaacagacgacgatcccacgcccaagaagcagcgcacaaaggcttcgaaaaaccacata
aacaacaacaacaacgatgagcctgccagcaagaaggccaagcttgatgctcctgtatta
gctgccggcggcacgttcatggaaaagctgcaacagctacaaagcaatgccaaaaaggac
gctgcgtacgatgaaattgtgacaacaacatcaaatatggatgaaccagttgtgtggcca
catcagaagctggacttcctgcagcctgacaagattaaagacaaggccggtaggcgacca
gatcatcccgactacgacaagagcacgctgcacgtgcccgagaagtttctcaatggactg
tcgccgggcgtgcgtcagtggtggatactcaagtcggacaacttcgattgtgtgctcttc
ttcaaggtgggcaagttctatgagctgtatcacggcgatgccgatgtgggcgtaaatgag
ctgggctttacctacatgcgcggcgaatttgcccactctggctttccagaaatctccttt
gacaagatgtcctccatactgatagacaggggctataaggtggcacgggtggagcaaacc
gaaactccggacatgatgaccgagcgctgcaaacgtataaaggccacaaagttcgacaag
gttgttgctcgtgagatctgtcagataacggatcgtggcacccaagtgtttggctcgcag
tgcgccattggacccaatcatcagccaaattatatgttggccatagtggagcaggatgcg
ggcacgagtagcaaatatggcatctgctttatagacacttccattggtgatttccatgtg
ggcgaattcgatgatgacaaaagctgctctcgcctgttgacgctgatctcccatcacatg
cctgtcctgctgcttcacgaaaaatcagcgcttagctctcgcacgcaacaaattctacgc
actgtgctcggcggcatacttaaggagcagctgccttctgctggcaaccaggtctgcagc
gctgagaagacgctgaagttgctagcggagcgctactatgctggcaatggcactgaggac
aactggccattggtgttgcgcaccatgcagtcggacacggatcacctgggcctcacgcct
gcggacccctacaagctggcactcaaagctctgggtcagtgcattcactacatagctaaa
tgtaagctggagcctaaagtcctgcccatggcgcgttatcaactgtatgtgccgcccgat
caagagcaggaggcgaacaccaagcaaccgctggctgctacactgcgtcgctctcacatg
gtattggatgccaccacattgtctaatctgcgcattgttggcgaggagcattcgttgctg
tcgacgctggatcattgctgcaccaagtttgggaagcggctgctgcatcactggctatgc
gcgcccagctgtgatttgattgtactgcgtgagcgacaggaggcgattggcgagctgctg
cgtcagcccgatgaactgcagcagttacgtgctttgttggcgcctatgccggactttgag
cggcacttagctcagattcatctgtttggcagtaagcgcattgcccaaactgagcatcca
gattccagggccatactcttcgaggagaagctgtacaacaaacagaagttgcgcagcttt
atgagcatactcaagggattcgagactctcatgaaattgccggtcatgtttcagacatgc
gagacgaagctaatgcagcgtttaactcagttgccacccaatgggggcagctatcccgat
ctcagcaagcagctgaagttctttgagaatgccttcgatcatgaggcggccgacaagacg
ggtgttattgcgccgcagccaggcgtggatgccgactacgatgaggtgcagcagcgcata
gcagacgtccaggagcgcctgaagatttatcttactgagcaggaacgtcattttggctgt
cgtgtggtatactttggctcggataaaaaacgatatcagctggaggtgccggagtcgcat
gcgcacaaggccaacaagtcgtatgcactggagggtcaggtcaagggaaagaaggctgcg
cgtcgctacaccacagcggaaacgaaggcgctgctgaaggacatgcagcaggcagaggag
gcgagaaatgcggtgctcaaggatttggctcgtcgcctcttcgaaaagttttccaatcac
tatcaacagtggaagcagtgcatcgactgtgtggctacgctagatgtgctcgccgccctg
gcggaatatgcgcgccagcaattggtcatctgtgtgccggagctggtctcggcacagcag
gcacagcccttcattgaactggaggaaggctatcatccatgcgcaaatccatcaacttac
atacccaatggcctgcagctgggcactaactcggaggcaccgttatcattacttactggc
ccaaatatgggcggcaagagcacgctaatgcgacaggtcggcttgttggttatcatggca
caaattggtgctcatattcctgctgtcagctgtcggctttcgcttgtggatcgaattttc
acacgtctaggcgcacaggatgatatactggccggtcacagcaccttcctggtagagctt
aacgaaacgtcacttatactgaagcatgccacgtgcaactctctggtgctgctcgatgaa
ctgggacgcggcacagccacttacgatggcaccgctatcgccgcctctgtggtcaacttt
ttggccaatctcaagtgtcgcacactattctccacgcattaccataacctgattgacttc
tttcacacggacaaaagaattacactaggccatatggcgtgcatggttgagaatgaggac
aacacagatcccacacaggagacagtcaccttcctgtacaaatacacagcgggtgcctgc
cccaaatcgtatggctttaatgcagccaagctggcaggcatgccacacggcattatcaaa
cgtgcctacgagctatccaaaaaagtagaggccattgcacttcagcgcaaaattacagct
aaaattgtagcagcagctgcaggtgatgtaaacaaaaagacggataaactaaataacttg
aaagatttgctgcagcagctgaaaatgtgtcatgtttag
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