Drosophila virilis: 6626090
Help
Entry
6626090 CDS
T01066
Symbol
Pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
dvi
Drosophila virilis
Pathway
dvi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dvi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
6626090 (Pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dvi03021
]
6626090 (Pcf11)
03019 Messenger RNA biogenesis [BR:
dvi03019
]
6626090 (Pcf11)
Transcription machinery [BR:
dvi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
6626090 (Pcf11)
Messenger RNA biogenesis [BR:
dvi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
6626090 (Pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Pcf11_C
Pcf11_helical
zf_PCFS4
Pfc11_Clp1_ID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
6626090
NCBI-ProteinID:
XP_015029751
UniProt:
A0A0Q9W2Z8
LinkDB
All DBs
Position
5:complement(19514563..19526469)
Genome browser
AA seq
1951 aa
AA seq
DB search
MDHIFQSYPEDARRIGEEYLSSLTDLNCNSKPLINMLTMLAEENINYAHVIVRVVEYHIS
QVPPEFKLPILYLIDSIIKNVKSSYVQLFGQCIVNIFLNAFESVQHSPSQVLEKVRERMY
LLRQTWNDVFPPSKMYALDVKVKRLDNNWPITAKPSQPNKIHVNPAIHVNPDFLKTGMVP
MPVNSALPGDMEEILQAKTRELLELKKRKLELELEQTKMHLKEQERQLSQAADAIAVAPI
GMPAPVSVLRPPGIETVIPPTVAPPMYPSGMRHVRPMAPVAAGGMIPIIGQPPFANKPKV
HPVNPAMLNSVRPRDPRLARQMQPQQSAQMAAPMRALDPRLESHKAPAASSSSTTTHKSS
RSRSKSPLRNTGSNRSSKSSSSSNHHSSSSNRKRSESKSSTASTSSSGSDGRHKGGNSNS
VSPVKRTSSSRDKHSAKEHNERNAHNGGSPANSKRKSSSPASSPAKSKRNATQKTISGRS
KAGGSSNARSRSRSPIYLDVDMRSVERSKSPEPAKTIPAVAVAPAAAPDATATTATAPAN
AVIANDLEKPNLSTATMLTSAATTTTTTAAAPPATVATNASSVRQSSPAPASSESLGKQL
SQGAGEKRSAGQLPPEGDTDEEDKQQQPQQKRSKSTKLDALFGSEDVDLRRELPVKPTTI
VPGGVIVVEDDSMDNWEANKQTAKQPLSPVKKPTLDELRAKLAKTVRHNNKLSKEKSKEH
PMAQRLKQLSELKANDDSQEAHDEKMRTILSQAQEMFENHGMNQEQYKELVSKVVVMSES
SKLKERRRETADDEDMERNAARDAVLRKRIPKLKGNENHASSSPRSDGEPRYEEQLMPAQ
AMPEKPQQPPKQKNKRDGKRRKPSKWGEQVDPAAAQRAAWQLAQNNNNNNNNNKRMTGGN
VAAGGGGFRGMPWQHPPLVMTQTAVPPPPQPPSMLSMPPVPPVSITKAINSLDNPMADVV
RSITIDGGSKEIRFYNQVAIIFMDGDEPHEIGFQHGQRAIYIDHNEPLALSFNDDYKPFQ
LDGQLHRIRFGHPSRELYIDEHWYEIYFGGPPVSLPIGNKLHVLKAEGPPPNVDIGRVRR
DLVVGKINMIVDAHTIVPLFLDGRQQTFHLGAEQHSLQFVDSFLYALLDGQLQKLEYGGL
PKSMKLNGGRNCFIRFGTLPKGVQAGKAHVQDMVYIKTEAPAEPPQPPPLPVPVIAAAAP
PAVPTLEQPAAAPAATTTTPAPAIPLPVAAAALGNLNIDELFQKLVSSGIIGGAATSAVA
SSSGAVNVPAAETSSSSNKDANAAAASVPAAAPTEPIKRIELHKPETIKTRQSAVIATLY
LGMQCSSCGVRFPPEQTIKYSQHLDWHFRQNRRERDSTRKATSRRWFYDLNDWRQYEEIE
DVEERERNFLEAQGQQLGPDAIDEVSQQRSLDSPVPSCAAGTDDLDRSCDMCHEKFEQFY
NEELEEWHLRSAIRVDEKIYHPLCYEDYKASLNPPAAVVNDSTTNGDMDMLNASDDNAMD
TLIKVEDDSDDAKKTSTMLLDDDDDDVIVLPNEEPSVTEIVDDDDDEYVPMAVTAEPETE
APSEKPTTSATPGEQEQQKEQQKDEEQQQRAENANESDVEIQEPNIPFTDLDTYVEKEPM
PMLNVKIKEEPKDDDEEDEDDGFEDVGTVVQLLPLPEDEISILSSETQTQTIDSTASPVT
MERPASVTSLSMTANEDDLELEPSAAMAGNSEADFNGENPQETHNLSAAGPAPALPLASI
VNKIKINITKNTSSNSHNSASTTTTTSAAATAAAAATDSQVSAISVIGATGNADVHQQQN
SIQTISTIPVLCGGNTFVPKIATSSSSSCLNAPPANISSISVIGSSYGSSSNNNNNNNVN
SRLPTLAATTTTTAATTSLGAPAAATGSSSSSGGPSTTAAAAQKSITPPPAAVEAEPEPV
IELKPALRQVTLKKTKKVQNGVETSGLCSIM
NT seq
5856 nt
NT seq
+upstream
nt +downstream
nt
atggatcatatattccaatcgtatccggaggatgcacgccgcattggcgaagagtattta
tccagtctaacggatttgaattgcaatagcaagccgctcatcaatatgctcaccatgctt
gccgaggagaatatcaactatgcccatgtcattgtgcgcgtggtggaatatcacatcagc
caggtgccgcccgaattcaaattgcccatactatatttaattgattcaataattaagaat
gtgaaaagcagctacgttcagttgtttgggcaatgcatagtcaacatatttctcaacgcc
ttcgagtcggtacaacactcgccatcgcaggtgctggagaaagtgcgtgagcgcatgtat
ctgcttcggcagacctggaacgatgtgttcccgccatccaaaatgtatgctttagatgtt
aaagtcaaacgtctggacaacaattggccgattactgccaaaccaagtcagccaaacaaa
atacatgttaatcctgccatacatgtcaatcccgattttctgaagacgggcatggtgcct
atgcccgtgaactcggccctgcctggcgacatggaggagatattacaggccaaaactcgt
gagctgctggagctcaagaagcgcaagctggaacttgaattggagcaaactaaaatgcat
ttaaaggaacaggagcgtcaactaagtcaagcagcagatgccattgctgtagcgccaatc
ggcatgcctgctcccgtatccgtactgcgtccaccaggcatagaaactgtcataccaccc
actgtggcgcctcccatgtatccaagcggcatgcgccatgtgcgtcccatggcgcctgtt
gcggctggcggcatgattccaataattggacaaccgccttttgccaacaagccaaaggtg
catccggttaatccggctatgctcaattcggtgcgtccgcgcgatccgcgcctggcacgc
caaatgcagccgcaacagtcagcacaaatggcagcgcccatgcgtgcactggatccgcgc
ctagagagccacaaagcacccgctgcctccagctcctcaacaacaacacacaaatctagt
cgatcgcgcagcaaatcaccgctgcgcaacacaggcagcaaccgctccagcaagtcaagc
agcagcagtaatcatcacagctcctcaagcaaccgcaagcgaagcgaatctaaaagctca
actgcctcaacatcatcgtccggctcagatggcaggcacaagggcggcaacagcaacagt
gtctcgcccgtcaagcgaacgtcaagctctcgcgacaagcattccgccaaggagcataac
gaacgcaatgcacacaatggcggctcgccggcaaacagtaagcgcaagagcagttcaccc
gctagctcaccagccaaatccaagcgcaatgccacacaaaaaactataagcggccgcagt
aaagcgggtggctcaagcaatgcgcgatcgcgcagtcgatcgccaatttacttggacgtg
gacatgcgcagcgtggagcgcagcaaatcaccagagccagcgaagacaataccagctgta
gcagtagctccagcagctgcaccagacgccacggccacaacagcgacagctccagctaat
gccgtcatcgcaaatgatttagagaaaccgaatttatcaacagcaacaatgctaacatca
gcagcaacaacaacaacaacaacagcagcagcaccaccagcaacagtcgccacgaacgcg
tccagcgtcagacaatcctcgccagcgcccgcgtcatcggagtctcttggcaagcagctg
tcgcagggcgccggtgagaagcgttcggcgggtcagctgccgcccgaaggcgataccgat
gaggaggataaacagcagcaaccacaacagaaacgcagcaaatccaccaaactggatgct
ctctttggcagcgaggatgtggatttgcgacgcgagctgcctgtcaaacctactactatt
gtgccaggtggcgttattgtcgttgaagatgactctatggacaattgggaggccaataag
caaactgccaaacaacctttgtcgcccgtcaaaaagcccacgctggatgaactacgcgcc
aaattggccaagactgtgcgtcacaacaataagctatccaaggaaaaatccaaagaacat
cccatggcacagcgtctcaagcagctgtcggagctaaaagccaacgatgactcgcaggag
gcgcacgacgaaaagatgcgcacgattctcagccaggcgcaggagatgttcgagaatcac
ggtatgaatcaggaacaatacaaagagctagtcagcaaggtggtggtcatgagcgagagc
agtaagttgaaggaacgacgccgcgaaactgccgatgatgaggatatggaacggaatgct
gcacgcgatgcggtgctgcgcaagcgcatacccaaactgaagggcaatgaaaaccacgcc
tccagttcgccgcgcagcgatggtgagccacgttacgaggagcaactgatgccggcacag
gccatgcccgaaaagccacagcagccgcccaagcagaagaataagcgtgacggcaagcgg
cgtaagcctagcaaatggggcgagcaggtggatccggcggcagcacagcgagccgcttgg
cagttggcccagaacaacaacaacaataataacaacaacaagcgcatgacaggagggaat
gtggcagccggcggcggtggtttccgcggcatgccctggcagcatccaccgttggttatg
acccaaactgcggtgccaccaccaccgcaaccgccctcaatgctatcaatgccacctgtg
ccgccggtaagcataaccaaggctattaattcattggataatccgatggcggatgtggtg
cgcagcataaccatcgatggcggcagcaaagagatacgcttttataatcaggtggccatc
atattcatggatggcgatgagccgcacgagattggcttccagcatggccagcgtgccatc
tacattgatcacaatgagccgctggcgttgagtttcaacgatgactacaagccctttcag
ttggatgggcagctgcatcgcatacgctttggccatccctcccgtgagctgtatatcgat
gagcactggtatgagatctactttggtgggccgcccgtgtcgctgccaattggcaacaaa
ctgcacgtactgaaagcggagggaccaccgccgaatgtggacataggacgcgtgcgccgg
gatctggttgtaggcaaaatcaacatgattgtcgatgcacacacaattgtgccactcttc
ctggacgggcgtcagcagacgttccatttgggcgccgagcagcattcgctgcagtttgtg
gacagtttcctgtatgcgctgctcgatgggcagctccagaagctagagtatggcggcttg
cccaagagcatgaagttaaatggtggtcgcaattgtttcatacgttttggcacattgccc
aaaggagtgcaagcgggcaaggcgcatgttcaggacatggtgtacattaagaccgaggca
ccagcggagcctccacagccaccgccactgccagtgcccgtgattgcagccgcagcaccg
ccagcagttccgacgctcgagcagccagcagctgctccagctgccacaacaacaactcca
gctccagcaatcccactgcccgtggccgcagctgctcttggtaatctcaatattgatgag
ctcttccagaaactcgtctcgtctggcataattggtggtgcagcgacatctgccgttgca
agcagtagcggcgccgtcaatgtacctgccgcagagacgagctccagctccaacaaagat
gctaatgcagccgcagcatctgtgcctgctgcagcgcccacggagcccattaagcgcatt
gaacttcacaaaccagaaacaatcaagacgcgacagtcggctgttatagccactctatat
ttgggcatgcagtgcagcagctgtggtgtacgcttcccgcctgagcagaccatcaagtat
agccaacacttggactggcatttccgacaaaatcgacgtgaacgtgactcgacgcgcaag
gcaacgtccagacgttggttttatgatctcaatgattggcggcagtacgaagaaattgag
gatgtggaggagcgtgaaagaaacttcctggaggcgcagggtcagcaactgggacccgat
gctatcgatgaggtgtcgcagcagcgttcgctggactcacccgtgcccagctgtgccgct
ggcacggatgatttggatcgcagctgtgacatgtgtcacgagaaattcgaacagttctac
aacgaagagctggaggaatggcatcttcgctcggctatacgtgtggacgagaaaatctat
cacccgctgtgctatgaagactacaaggcgtctcttaatccgccggcggcagttgtaaac
gattccacgaccaatggggatatggatatgctcaatgccagcgatgacaatgccatggat
acacttatcaaagtggaggatgactcggatgatgccaagaagacatcaaccatgctgctg
gatgacgacgatgacgatgtcattgtgctgcctaatgaggagccgagtgttacagaaatt
gtcgacgacgatgatgatgaatatgtgccgatggctgtgactgctgaaccagagacagag
gcgccaagtgagaagccaacaacgtcagcaactcctggcgaacaggagcaacagaaggaa
caacaaaaggatgaagaacaacaacaaagggcagagaatgccaatgagtcggatgtagag
atacaagagccaaacattccctttactgatttggacacctacgtagaaaaagagccaatg
ccaatgctcaatgttaaaatcaaagaggagcccaaagatgatgacgaagaggacgaagac
gacggctttgaggatgtgggcacggtggtgcaattgctgccactgccagaagatgaaata
tctatactaagcagtgaaactcaaacccagaccatcgattcaaccgcctcgccggtaacc
atggagcgtcccgcctcggtaacatcgctttctatgacggctaatgaggatgatctggaa
ctggagccaagcgctgcgatggcaggcaacagcgaggccgattttaatggtgagaatcca
caggagacgcataatctgagcgcagcgggaccggcgccggcgttacctttggctagcata
gttaataaaataaaaataaatatcactaagaatacaagtagtaatagtcataatagtgcc
tcaacaacaacgacgacgtcggcagcggcaacggcagcagcagcagcaacggactcgcaa
gtgtcggcaataagtgtaattggcgccacaggaaatgccgatgtgcatcagcagcagaat
tccatacaaacaatttccacaattccagtgctgtgcggaggcaatacgtttgtgccgaag
attgccaccagcagcagcagcagctgtcttaatgcgccgcctgcaaacattagttccatt
tcggttattggcagcagctacggcagcagcagcaacaacaacaacaacaataatgtcaac
tcacgtttgcccacactagcagcaacaacaacaacaacagcagcaacaacatcgctgggc
gcgccagcagcagcaactggcagcagcagcagcagcggcggcccatcaacaacggcggcc
gctgcgcaaaagtcgataacaccaccacccgctgcagttgaagctgagccggagcctgtt
atcgaactgaagccggcgctgcgacaggtgacgctcaagaaaacgaagaaagtgcaaaat
ggcgtcgaaacgtcgggcctgtgctcgatcatgtaa
DBGET
integrated database retrieval system
