Drosophila virilis: 6629237
Help
Entry
6629237 CDS
T01066
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG8
KO
K18734
protein SMG8
Organism
dvi
Drosophila virilis
Brite
KEGG Orthology (KO) [BR:
dvi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvi03019
]
6629237
Messenger RNA biogenesis [BR:
dvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
6629237
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg8_Smg9
TPR_TmcB
Motif
Other DBs
NCBI-GeneID:
6629237
NCBI-ProteinID:
XP_032294022
LinkDB
All DBs
Position
4
Genome browser
AA seq
962 aa
AA seq
DB search
MSYKNYYTWKYPDIPEHVAPLLLELQNSLVIVGIIGRSKCAQANKMSAFGMQPDKTHEPA
DGQILCYYKPGTNMLLLHFETTHDEAVLGQQLLKQTSVDFDSFYEQMRSRFLRMLLLALH
VCHILVYVETAQTFDTTLVTICQLLKYVREKHVLDFLPQMLRETAAGSLLSDRARLCTPR
VLFLFENYPQDEEKSRERISAYEFQTEDKIYELLRQYNIVTNNANNSLFALPNNKQFVFY
NAHEKLRPDQLLLAIEALNATMYKSDSKEEEEDTEILELAPFEGFVKPYGAGYEARESDE
QLYRKKHTVWHFLQRHVQDALQGCFDEGSFKQLPQSAQFQLLGVNDWHICMDTIHRLLIG
NIQEVSYVTNNQNYKAYLRDFNESLNYEKKFWGHLCDLGLKKGISAYKSSAPAIYGSVTH
RQLLADAILAFEEEGRGPYAELALAKLSEICLRHWHDGRQQCEQLSLRGNPCTQPKDAPH
DKHSSGIVHISSCNCGRTQGRREDPFTLRQANYDYYEHMAAMCNLCVKVKKFQLPVFTPS
ISDYRAAAFEAAFPLLLQAAKNRTEIATGGDSDLEAAGELYSQPINATEQAPQKPQITLS
NGCSQPALSATYGSDLNMSIAGFGASLNEGEEVRSPEISSQIASSGLSSRSNSTSSGTSS
ANTANELVLQLKERTDQNAANAAVSEICPEALPIVASTEQVSTTEYLPGLVHMSSGCELL
PLFPSWSLACVGPSSIYSHNTGLQEHFQSGFLSGANFLLPWDVHVRLVQPHKHPQQQQQS
MGKKSQRYRKHGDRLALKIFVGFEYECSRGHRFMMCSPDRVLRGGADIERDTSSKVVNNN
MPLYFPCPCRAQPTYLAQLMRIHVVTPKAPVNIILDPKMCVGKYTFTLGCPTLPRLSQSA
YWILRLPYVYQGDNVLITPPERLEPDDNMASGCLLAGMFGIAETDTNETNQQAITPLTFT
RL
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgagctacaaaaattattacacatggaagtatccggacatacccgagcatgtagcgcct
ttgctattggagctacagaactcgctggtgattgtcggcataattgggcgctcgaagtgt
gcgcaggccaacaaaatgagcgcctttggcatgcagcccgacaagacgcacgagccggcg
gacggacagattctatgttattataagcccggcaccaacatgctgctgctgcactttgag
accacccacgatgaggcggtgctgggccagcagctgctgaagcaaacttccgttgacttt
gacagcttctacgagcagatgcggagtcggtttctgcgcatgctgctgctggcgctgcac
gtgtgtcacattttagtttacgtagaaactgcacagaccttcgacacgacactggtgaca
atttgccagctgctgaagtatgtgcgagagaaacatgtgctggactttttgccacaaatg
ctgcgtgaaacagctgccggcagcttgctcagcgatagggcgcgactctgcacgccacgc
gttctgtttctcttcgagaactatccccaggatgaggagaagtcacgggaacgcatttcc
gcctatgaattccaaacggaggacaagatatacgagctgctgcgccagtacaacattgta
actaacaatgccaacaattccctgttcgcgctgcccaacaacaagcagtttgtgttctac
aatgcccacgagaagctgcgtccggatcagctgctgcttgccattgaggctcttaacgcg
accatgtacaagtcggactccaaagaggaggaggaggacaccgaaattttagagcttgca
ccgttcgagggctttgtcaagccctatggcgcgggctacgaggcgcgtgagtcggacgag
cagctctacagaaagaagcacaccgtttggcacttcttgcagcgtcatgtgcaggatgca
ctgcaaggctgctttgatgagggctccttcaagcagctgccacagtcggcacagttccag
ttgctgggagttaatgattggcacatttgcatggatactatacacaggctgctcatcggg
aatatccaggaagtcagctacgtaacaaataatcaaaattataaagcctatctgcgggac
tttaacgaaagcctcaactatgagaaaaaattctggggccatctgtgcgacctgggctta
aagaagggcatatccgcctataaaagttccgcgcccgccatttacggcagcgtcacgcac
aggcagctgctggcggatgctatactggcctttgaggaggaaggacgcggtccatatgcg
gaactggcgttggccaagctcagtgaaatttgcttgaggcactggcacgacggcaggcag
cagtgcgaacagctcagcctgcgtggcaatccctgtacacagccaaaggatgcgccgcac
gataagcatagcagcggcattgtgcacatctccagctgtaattgtgggcgcacgcagggc
aggagagaggacccgttcacactgcggcaggccaattacgattactacgagcatatggct
gccatgtgtaatttgtgcgtcaaggttaaaaagtttcagttgcccgtatttacgccttca
ataagtgattatcgagcggccgcttttgaggctgcttttcccctgctgttgcaggcggct
aagaaccgcacggagatcgcgacaggaggcgacagcgatctggaggccgccggtgagctc
tactcccagccgattaacgcaacggaacaggcaccacagaagccgcagataaccctaagc
aatggctgctcgcagccggcattgtcggctacctatggctccgatttaaacatgtcgata
gcgggttttggcgcctcgctgaatgagggcgaggaggtgcgatcaccggagatcagctcg
caaattgccagcagtggcttgagcagccgcagcaacagcaccagcagcggcacctccagt
gccaacacagccaacgagctagtgctgcagctcaaggagcgcaccgatcagaatgcggcc
aatgccgcagtcagcgagatctgtccggaggcgctgccgattgtagcgtcgacagagcag
gtctctaccacggaatatctgcccggcttggtgcacatgagcagcggctgcgagttactg
ccgctgtttccgagctggtcgctcgcctgtgtcgggcccagttccatttatagtcacaat
accggactgcaagagcatttccaaagcgggtttctgtccggcgccaactttctgctgccc
tgggacgtgcacgtccgcctcgttcaaccgcacaagcatccgcagcagcaacagcagtcg
atgggcaagaagagtcaacgctatcgcaagcacggcgatcgcctagcgctcaagatcttc
gttggcttcgagtacgagtgctcgcgtggccatcgcttcatgatgtgcagtccggatcgt
gtgctgcgcggcggtgcggacattgaacgcgacaccagcagcaaagtggtgaacaacaat
atgcccctgtatttcccctgcccgtgtcgcgcacagcccacatatctggcgcagcttatg
cgcattcatgtggtcacacccaaggcgccagtcaacataattctcgatcccaagatgtgc
gtgggcaaatacaccttcaccttgggctgccccacgttgccgcgactttcgcagagcgcc
tactggatactgcgcttgccctacgtctatcagggcgacaatgtgctgataacaccacca
gaaagacttgagccggacgacaacatggcctccggctgcctgctggccggcatgtttggc
atcgccgaaacggacaccaacgaaacgaatcagcaagcgataaccccgctgacctttaca
cgactataa
DBGET
integrated database retrieval system
