Drosophila virilis: 6630461
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Entry
6630461 CDS
T01066
Symbol
Sym
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
dvi
Drosophila virilis
Pathway
dvi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dvi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
6630461 (Sym)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dvi03021
]
6630461 (Sym)
03019 Messenger RNA biogenesis [BR:
dvi03019
]
6630461 (Sym)
Transcription machinery [BR:
dvi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
6630461 (Sym)
Messenger RNA biogenesis [BR:
dvi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
6630461 (Sym)
U7-dependent histone pre-mRNA processing factors
6630461 (Sym)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT
HEAT_2
Cnd1
Sec7-like_HDS
HEAT_GCN1_C
Hydantoinase_A
Motif
Other DBs
NCBI-GeneID:
6630461
NCBI-ProteinID:
XP_002053458
UniProt:
B4LYQ1
LinkDB
All DBs
Position
2:complement(18199363..18203376)
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AA seq
1178 aa
AA seq
DB search
MDSIIGRNQFVSETANLFTDEKTATARAKVVEWCNEFGTANATLKCELLVKVQEIVLSSC
VELAEEFLEPVLSLAHDQNQEVRKQVVSFIEQICKVKVELLPYVINVISMMLRDSSAQVI
KRVIQACGSIYKNGLQYLCSLTDASDSAEQAWSVLSLIKAQILDMIDNENDGIRTNAIKF
LEGIIILQSYADEDSMKREGDFSLSDVPEQCKLIRRQKLQDEGTNIFDIMLQFHGTTHIS
SVNLIACTSSLCTVAKMRPIFMGSVVEAFRQLNNNLPPTLTDSQVSSVRKSLRLQLQMLL
KLRGSFEFAGTIRNILMDLGASANEIQKMLPKMDKQEMARRQKRILENAAQSLAKKARLV
EQQREKPQQPREMELDEEELERQRQKSTRVNEKFLAEHLRSTETVVNLVVEFLPTLPEAA
PAKFLAEYTPIKQLSLPQQVSNISHQFGQQLTELRLGPGSAAFSKEPPMRPKSQATPAIS
DAAAVAMDVDEAPDKLSEQELQRKEEATKKLRETMERSKGEQTVIERMKERAKTLKLQEI
TKPLARNIKEKFLLDAIMRILNSERQCIMGGVAAKRRKLVTVIAATFPDNVRYGIMDFIL
SDIKQRIDLAFSWLFEEYSLLQGFTRHTYVKTENRPDHAYNELLNQLISGINERCEYKDR
IILLRRLYLEAPILTEEAVVQLVKLCLVEEFMPHGLEIVKDLAVLRPPRKNRFVRVLLNY
AVHERADLRERALAHLITIYHVHKIVPARIDEFAIEWLEYVVAETPPSAIFSVDYGRPTP
ETAWKEDTAKVCLLLALTLLPYKPEVYLEKICQVFTETSAELKRTILRSLDAPVKKLGVE
SPALLKLLEDCPKGLETLVIRIIYILTERVPTPHPDLVHRVRDLYKNKVKDVRVLIPILS
GLSRSELISVLPKLIKLNQAVVKEVFNRLLGIGAEFAHQQMALSPTDLLVALHTIDTNVC
DLKAIVKATSLCLAEREVYTQEVLMAVLQQLVEIMPVPTLMMRTTIQSLTLCPRLSNFVL
NLLQRLILKQVWRQKVIWEGFLKTVQRLKPQSLSVLLQLPPPQLADALQQCPDLRPQLLE
YAESIQDEPMSGITQQILDIITGKSVDVFVTDESGGYINPDNIKKELLDPSDISVISTVP
VLTTLPVAAPMPVPAPMPQPVPAPVLSDLNQPLPPGED
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atggacagcataattgggcgcaaccagttcgtctcagaaacagcgaatctctttacagat
gagaagacggccacagcccgtgcaaaggttgtggaatggtgcaatgagtttggcacagcg
aatgctacgttgaaatgtgagttgctcgttaaagttcaagaaattgtcctcagctcatgt
gttgagcttgccgaggaattcttagaaccggtgctgtcgctggcgcacgatcagaatcag
gaggtgcgcaagcaagtggtctcattcatagagcaaatatgcaaggtcaaagtcgagttg
ctgccatatgtaattaatgtgatatcgatgatgttgcgggattcctcggcacaggtcatc
aagcgtgttatacaggcttgtggcagtatctacaaaaacgggctgcaatatttatgcagc
ctgactgatgccagcgatagtgccgagcaagcatggagcgtcctgagtttgataaaagca
caaatcctggatatgattgacaatgagaacgatggaatacgcacaaatgccattaagttt
ctggaaggcatcataatattgcaaagttatgcggacgaggatagcatgaaacgcgagggc
gacttttcgctatctgatgtgccggagcagtgcaaacttatcaggcgccagaagctgcag
gacgagggcaccaacatatttgacattatgctgcagttccatggcactacacacatctca
tcagtgaatctgattgcctgcacaagtagtctttgtacagtggctaaaatgcgtcccatt
ttcatgggctccgtcgtggaggcctttcgtcagctcaacaataacttgccgcccacactg
actgactcgcaggtgagctcagtgcgcaagagcttgcgcttgcagctgcaaatgctgctc
aaactgcgcggctcctttgagtttgctggcaccatacgcaatatactaatggatcttggt
gccagcgccaatgaaatacaaaagatgctccccaaaatggacaagcaagagatggcccgc
cgacagaagcgcattttagagaatgcagcacagagtttagctaaaaaggcgcgtttagtg
gagcagcagcgggaaaaaccgcagcaaccgcgagagatggaactggatgaggaggagctg
gaacgacagcggcagaaaagtacgcgtgtcaatgaaaagtttctggcggagcatttacgt
tccactgaaactgtggtcaatcttgttgttgagtttttgcccacattgccggaggccgca
ccagctaaattcttagcggagtacacaccaatcaaacagctgtccctgccacaacaagta
agcaatatttcccatcaatttggacagcaactgacggagttgcgacttggacccggctcg
gctgcgtttagtaaagagccgccaatgagaccaaagagtcaagcgactcctgccatatca
gatgcagcagctgtcgctatggatgtagacgaggcgccagataagctaagcgaacaggag
ctgcaacgcaaggaagaagccaccaaaaagttgcgtgagaccatggagcgctctaagggc
gaacagacggtgattgagcgcatgaaggagcgtgccaagacactcaagttgcaggagatt
accaaacctctggcacgcaacattaaagagaagtttctgctggatgccatcatgcgcatc
cttaactccgagcggcagtgcatcatgggcggcgtggcagccaagcgccgcaaattggtt
actgttattgccgccacatttccggataatgtgcgttatggcatcatggactttatactg
agcgatatcaagcagcgtatagatcttgccttctcctggctctttgaggagtactccttg
ctgcagggctttacacgccacacctatgtaaagacggagaaccgtccagatcacgcctac
aacgaattattgaatcagcttatatctggcatcaacgagcgctgtgagtataaggacaga
atcattttgctgcgtcgtctttatctagaagcgcctattctaaccgaggaggccgtagtt
cagcttgtaaagctgtgcctggtagaggagttcatgccgcatggcttggagattgtcaag
gatctggcggtccttcgaccgccacgtaaaaatcgttttgtacgtgtgctcctcaactat
gcagtgcacgaacgtgccgatctacgagagcgtgcgttggcgcatttgattaccatctat
catgtgcataagattgttccagcgcgcattgatgagtttgccatagagtggttagaatat
gtggtggctgaaacaccaccaagtgccatattctcggtagattacggcaggcccacgccg
gagactgcatggaaggaagataccgctaaggtgtgtctgcttctagccctcacactgttg
ccctacaaaccggaagtttatctggagaagatctgtcaggtgtttaccgagacgtcggca
gaactgaaacgtaccatactacgtagtttggacgcacccgtgaagaaactgggcgtggag
tctccagcgttgcttaagctgctggaagactgtcccaagggcttggaaactttggttata
cgcatcatttacatattgactgaacgcgtgcccacaccacatccggatctggtgcatcgg
gtgcgtgatctttacaaaaacaaagtcaaagatgtgcgcgtgctcatacccattctgagt
ggcctttcccgttctgagctaatttccgtgttaccaaaattgattaaactcaatcaggcc
gtggtgaaagaggtatttaatcgcttgcttggcatcggcgccgagtttgcgcatcagcag
atggcgctatcgcccacagacttgcttgttgctctgcacaccattgatacgaatgtgtgc
gatcttaaggccattgtaaaagccacgtcgctatgtctggccgagcgtgaagtgtacacg
caggaagtgcttatggcagtgctgcagcaactggtggagataatgcctgtaccaactctg
atgatgcgtactaccatacagagcttaacgctgtgtccacgtctctcaaactttgtgctg
aaccttctgcaacgtctgatactgaagcaggtgtggcgtcaaaaggtaatctgggagggc
ttcctcaagacggtacaacgacttaagccgcaatcgctgtctgtgctgttgcaactacca
cccccgcaattggcagatgcactgcaacagtgcccagatcttagaccgcaactacttgag
tacgcggagagcatacaggacgagcccatgagtggtattactcagcaaatactggacatc
attaccggcaaatcggtggatgtgtttgttacggatgaaagcggcggctacatcaatcct
gacaacatcaaaaaggagctgttggatccctcagatatcagcgtgatttccacagtgccg
gttttgactacactaccagtggccgcaccaatgcccgtacccgcaccaatgccacagcca
gtgcccgcgcccgtgcttagcgacttaaatcaaccgttgccacctggcgaggattag
DBGET
integrated database retrieval system
